Detailed information NTG0868210

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RAL92_RS05580
• Genome accession: NZ_CP132337
• Coordinates: 1184438..1185310 (-)
• Length: 290 a.a.
• NCBI ID: WP_253123383.1
• Uniprot ID: -
• Organism: Pseudomonas otitidis strain Tg_9B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1179438..1190310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAL92_RS05540 (RAL92_05545)	-	1180717..1180890 (-)	174	WP_044406847.1	DUF3094 family protein	-
RAL92_RS05545 (RAL92_05550)	-	1180970..1181596 (-)	627	WP_044406964.1	DUF1780 domain-containing protein	-
RAL92_RS05550 (RAL92_05555)	-	1181716..1182141 (+)	426	WP_044406849.1	GNAT family N-acetyltransferase	-
RAL92_RS05555 (RAL92_05560)	-	1182138..1182614 (+)	477	WP_052807598.1	hypothetical protein	-
RAL92_RS05560 (RAL92_05565)	-	1182611..1183297 (+)	687	WP_142011982.1	energy-coupling factor ABC transporter permease	-
RAL92_RS05565 (RAL92_05570)	-	1183408..1183623 (+)	216	WP_160481384.1	hypothetical protein	-
RAL92_RS05570 (RAL92_05575)	yacG	1183636..1183833 (-)	198	WP_044406857.1	DNA gyrase inhibitor YacG	-
RAL92_RS05575 (RAL92_05580)	coaE	1183830..1184441 (-)	612	WP_346841808.1	dephospho-CoA kinase	-
RAL92_RS05580 (RAL92_05585)	pilD	1184438..1185310 (-)	873	WP_253123383.1	A24 family peptidase	Machinery gene
RAL92_RS05585 (RAL92_05590)	pilC	1185313..1186530 (-)	1218	WP_346841809.1	type II secretion system F family protein	Machinery gene
RAL92_RS05590 (RAL92_05595)	pilB	1186534..1188237 (-)	1704	WP_346841810.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RAL92_RS05595 (RAL92_05600)	-	1188462..1188962 (+)	501	WP_346841811.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31882.91 Da
• Isoelectric Point: 6.4671

>NTDB_id=868210 RAL92_RS05580 WP_253123383.1 1184438..1185310(-) (pilD) [Pseudomonas otitidis strain Tg_9B]
MPLVDFLAGNLPAFVFCVFLLGLLVGSFLNVVIYRLPVMMFRDWKVQAREALELPPEPPGETFNLVLPNSRCPHCQHEIK
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDIDHQLLPDSLV
LPLLWLGLIVNSQGLFTGLEDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=868210 RAL92_RS05580 WP_253123383.1 1184438..1185310(-) (pilD) [Pseudomonas otitidis strain Tg_9B]
ATGCCTCTTGTTGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGTGTATTCCTCCTCGGCCTCTTGGTCGGCAG
TTTCCTCAACGTGGTCATTTACCGATTGCCGGTGATGATGTTCCGCGATTGGAAAGTCCAAGCCCGCGAGGCCCTGGAGT
TGCCGCCGGAGCCGCCGGGCGAGACGTTCAACCTGGTTCTGCCGAACTCCCGCTGCCCCCATTGCCAGCACGAGATCAAG
GCCTGGGAGAACATCCCGGTGGTGAGTTGGCTGGCCCTGGGCGGCAAGTGTTCGTCGTGCAAGGCCCCCATCAAGAAGCG
CTACCCGCTGGTGGAACTGGCTTGTGGGCTGCTTTCCGCCTACGTCGCCTGGCACTTCGGTTTCACCTGGCAGGCGGGCG
CCTTCCTGGTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGACATCGACCACCAGCTGCTCCCTGATTCCCTGGTG
CTGCCGCTGCTCTGGCTTGGGCTGATCGTCAACAGCCAGGGCCTGTTCACCGGGCTGGAGGATGCCCTCTGGGGCGCGGT
AGGCGGCTACCTGAGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGAGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGT
GCGGTACTGGGGATCATCATCCTCAAGCTGCGCGATGCCGACAGCGGCACGCCCATTCCCTTCGGCCCCTACCTGGCGAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.632	98.276	0.517
pilD	Vibrio cholerae strain A1552	55.431	92.069	0.51
pilD	Acinetobacter nosocomialis M2	51.93	98.276	0.51
pilD	Vibrio campbellii strain DS40M4	53.114	94.138	0.5
pilD	Neisseria gonorrhoeae MS11	52.107	90	0.469