Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q4617_RS14040 Genome accession   NZ_CP131470
Coordinates   2864214..2865440 (+) Length   408 a.a.
NCBI ID   WP_112987174.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2859214..2870440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS14005 (Q4617_14005) rimP 2859839..2860363 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  Q4617_RS14025 (Q4617_14025) secG 2860986..2861315 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  Q4617_RS14030 (Q4617_14030) tpiA 2861328..2862119 (-) 792 WP_112987172.1 triose-phosphate isomerase -
  Q4617_RS14035 (Q4617_14035) pilB 2862465..2864189 (+) 1725 WP_112987173.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q4617_RS14040 (Q4617_14040) pilC 2864214..2865440 (+) 1227 WP_112987174.1 type II secretion system F family protein Machinery gene
  Q4617_RS14045 (Q4617_14045) pilD 2865440..2866300 (+) 861 WP_112987175.1 A24 family peptidase Machinery gene
  Q4617_RS14050 (Q4617_14050) coaE 2866302..2866901 (+) 600 WP_112987176.1 dephospho-CoA kinase -
  Q4617_RS14055 (Q4617_14055) - 2866898..2867809 (-) 912 WP_112987177.1 DMT family transporter -
  Q4617_RS14060 (Q4617_14060) rlmB 2867840..2868589 (-) 750 WP_004916859.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q4617_RS14065 (Q4617_14065) - 2868779..2869105 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  Q4617_RS14070 (Q4617_14070) - 2869141..2869293 (-) 153 WP_171293753.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44964.37 Da        Isoelectric Point: 9.8135

>NTDB_id=862564 Q4617_RS14040 WP_112987174.1 2864214..2865440(+) (pilC) [Acinetobacter junii strain SC22]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKSEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVVNMSKWMQEYWFILIIAIGFFIT
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNLFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=862564 Q4617_RS14040 WP_112987174.1 2864214..2865440(+) (pilC) [Acinetobacter junii strain SC22]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGTGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATTACGGTTTTCACACGCCAATTAGCTACA
ATGATGAAAGCAGGTGTACCGTTGGTACAAGGCTTTGAGATTGTTGCTGAAGGCTTAGAAAACCCATCCATGCGTGAGGT
CGTACTAGGATTAAAAAGTGAAGTTGAAGGTGGTAATACTTTCGCTGGCGCTTTAAAAAAATACCCTCAATACTTCGATA
CCTTATTTTGTTCACTGGTCGAATCAGGGGAACAGTCGGGTGCTCTTGAGACTATGCTAGATCGTGTCGCGGTATATAAG
GAAAAAAGTGAGTTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGACCTCTTTACATCCTTTGGAGCTGATCTACCAGCTTTTA
CCCAAATGGTTGTAAATATGTCTAAATGGATGCAAGAGTATTGGTTTATCCTCATTATTGCTATAGGTTTTTTTATCACA
GGATTCTTGGAGGCAAAAAAACGTAGTAAAAAGTTTAGAGATACATTGGATAAGCTTGCTCTAAAATTGCCGATTTTTGG
AGATCTTGTATATAAAGCAATTATTGCTCGCTATAGCCGCACTTTAGCTACCACTTTTGCTGCAGGCGTACCATTAATTG
ATGCGCTTACATCCACAGCAGGTGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAAATTAGAGAAGATGTTGCG
ACTGGACAACAGCTCCAATTCGCGATGCGTGTTTCAAACCTCTTCCCTGCGATGGCAATTCAAATGGTTGCAATTGGTGA
AGAGTCTGGCGCTCTTGATTCGATGTTAGATAAAGTCGCAACACACTATGAAAATGAAGTCGACAACGCAGTAGATGGTC
TCACTTCAATGATGGAACCTCTTATTATGGCAATTCTTGGTGTATTAGTAGGCGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAGATGGGTTCAGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

91.667

100

0.917
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

60.345

99.51

0.6
  pilC Legionella pneumophila strain ERS1305867

54.074

99.265

0.537
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.337

99.02

0.409
  pilC Thermus thermophilus HB27

36.973

98.775

0.365