Detailed information NTG0862565

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q4617_RS14045
• Genome accession: NZ_CP131470
• Coordinates: 2865440..2866300 (+)
• Length: 286 a.a.
• NCBI ID: WP_112987175.1
• Uniprot ID: A0A365PJ16
• Organism: Acinetobacter junii strain SC22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2860440..2871300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q4617_RS14025 (Q4617_14025)	secG	2860986..2861315 (-)	330	WP_004916847.1	preprotein translocase subunit SecG	-
Q4617_RS14030 (Q4617_14030)	tpiA	2861328..2862119 (-)	792	WP_112987172.1	triose-phosphate isomerase	-
Q4617_RS14035 (Q4617_14035)	pilB	2862465..2864189 (+)	1725	WP_112987173.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q4617_RS14040 (Q4617_14040)	pilC	2864214..2865440 (+)	1227	WP_112987174.1	type II secretion system F family protein	Machinery gene
Q4617_RS14045 (Q4617_14045)	pilD	2865440..2866300 (+)	861	WP_112987175.1	A24 family peptidase	Machinery gene
Q4617_RS14050 (Q4617_14050)	coaE	2866302..2866901 (+)	600	WP_112987176.1	dephospho-CoA kinase	-
Q4617_RS14055 (Q4617_14055)	-	2866898..2867809 (-)	912	WP_112987177.1	DMT family transporter	-
Q4617_RS14060 (Q4617_14060)	rlmB	2867840..2868589 (-)	750	WP_004916859.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
Q4617_RS14065 (Q4617_14065)	-	2868779..2869105 (-)	327	WP_004958605.1	pyrimidine/purine nucleoside phosphorylase	-
Q4617_RS14070 (Q4617_14070)	-	2869141..2869293 (-)	153	WP_171293753.1	hypothetical protein	-
Q4617_RS14075 (Q4617_14075)	recN	2869628..2871289 (+)	1662	WP_099949296.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31998.53 Da
• Isoelectric Point: 7.4720

>NTDB_id=862565 Q4617_RS14045 WP_112987175.1 2865440..2866300(+) (pilD) [Acinetobacter junii strain SC22]
MQSFFFYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDQSKLTLSQPASTCPKCQTP
IKWFQNIPIISWLVLRGKCGTCQNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLTLTWALIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTASAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=862565 Q4617_RS14045 WP_112987175.1 2865440..2866300(+) (pilD) [Acinetobacter junii strain SC22]
ATGCAATCTTTTTTCTTTTACTTCCTTGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGCTTGTGCATCGG
CAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAGGAATGCCAAATGCTTTTAC
ACCCTGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGCTTCTACTTGTCCTAAGTGTCAAACGCCT
ATTAAATGGTTCCAGAATATTCCTATTATTAGTTGGTTAGTACTTCGCGGTAAATGTGGCACTTGCCAAAATCCAATCAG
CATTCGCTACCCGTTGATTGAATTACTTACTATGATCTGTTCATTGATCGTTGTGGCAGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAACTCTAACGTGGGCACTTATTGCACTCACTTTTATTGATTTTGATACACAGTTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGGCTGGGTATCAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTACCTATTTAAAATCATCACGGGCAAAGAAGGCATGGGCTATG
GTGATTTTAAACTGCTTGCAGCCCTTGGTGCATGGATGGGTCCGATGATGTTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGCGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A365PJ16

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	82.168	100	0.822
pilD	Acinetobacter nosocomialis M2	82.168	100	0.822
pilD	Vibrio cholerae strain A1552	51.736	100	0.521
pilD	Vibrio campbellii strain DS40M4	51.504	93.007	0.479
pilD	Neisseria gonorrhoeae MS11	46.154	95.455	0.441