Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q4617_RS01695 Genome accession   NZ_CP131470
Coordinates   357711..359849 (+) Length   712 a.a.
NCBI ID   WP_171293826.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352711..364849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS01675 (Q4617_01675) pilM 354683..355741 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  Q4617_RS01680 (Q4617_01680) pilN 355741..356385 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  Q4617_RS01685 (Q4617_01685) pilO 356382..357122 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q4617_RS01690 (Q4617_01690) pilP 357122..357649 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  Q4617_RS01695 (Q4617_01695) pilQ 357711..359849 (+) 2139 WP_171293826.1 type IV pilus secretin PilQ Machinery gene
  Q4617_RS01700 (Q4617_01700) aroK 359869..360429 (+) 561 WP_112986741.1 shikimate kinase AroK -
  Q4617_RS01705 (Q4617_01705) aroB 360450..361532 (+) 1083 WP_112986742.1 3-dehydroquinate synthase -
  Q4617_RS01710 (Q4617_01710) - 361549..362427 (+) 879 WP_112986743.1 hypothetical protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 77250.58 Da        Isoelectric Point: 5.9981

>NTDB_id=862543 Q4617_RS01695 WP_171293826.1 357711..359849(+) (pilQ) [Acinetobacter junii strain SC22]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSVNVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLSPLQTEYIQLSYAKAADIEKLITQGKNGSGNGNRNQGANDLLGDS
VGSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDL
LVGGSDTTLWNLREPTADSETGGWKYDIERPDNLNVNLGAVTRGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPK
VLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGTPTPTGQLTINKNT
IDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=862543 Q4617_RS01695 WP_171293826.1 357711..359849(+) (pilQ) [Acinetobacter junii strain SC22]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGGGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCCGTCAATGTGGCTGCAGATGATCAGCGTGCACGTTTGATTGTAAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGGGTTTCCAATATTGGTTTTCAACGAGGAAATCAAGGTGAAGGACTA
GTTGTTATCGATTTATTGGGGGGTAATACACCAGTAGATGTACAACAACAAGGAAGTAAAATTGTTGTTCGTACTCTTGG
AAATAAAATCCCAACGCACTTGGCGCGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ACGACAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAATCACCGAATAAAGCTAAGCCACAAACTTATACTGGAAATAAAATTTCATT
GGATTTCCAAGACATCGAGGTTCGCCGTGTTTTGCAATTATTAGCAGACTTTACGGGAATCAACATGGTTGCTGCTGATA
CTGTACAAGGAAATATTACACTACGTCTTAAAGACGTTCCTTGGGATCAGGCTCTTGATATCGTTTTGAAAACAAAAAAC
TTGGATAAGCGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTACTGAGCTAATCAAAGCGGAAGAGGATGAAGCGAA
AGCAATCGCTCAAAGTGTGAAACTTTCACCTTTGCAAACAGAGTATATTCAATTGAGTTATGCGAAAGCGGCAGATATTG
AAAAACTCATTACTCAAGGTAAAAATGGCTCAGGTAATGGTAATCGTAATCAGGGAGCTAATGATCTGTTAGGGGATAGC
GTAGGTAGTTTATTGAGCCCACGCGGAACTGTTTCGATTGACCCACGGACAAATACGTTGATTATAAATGATACATCTCA
AAAGATTGATCAAATACGTAAAATGATCGATTTACTCGATGTTTCGGTTAAACAAGTGATGATTGAAGCACGTATTGTGC
GTGCAAGTACAGACTTTACCAAAGAGATGGGTGTGAAGTGGGGGATATTGTCTCAAGGTATAGCATCTAATAATGATTTG
CTTGTTGGTGGTAGTGATACAACTTTATGGAATTTACGAGAACCTACAGCTGATAGTGAAACTGGTGGTTGGAAATATGA
TATTGAGCGTCCAGATAATCTGAATGTGAATTTAGGTGCTGTGACACGTGGAGCAAGTCGTATTGCTTTTGGTTTAATTA
GTCTTTCAGATTTTATGTTGGACCTAGAGTTGTCGGCTGTTCAGGCTGATGGTTATGGTGAAGTAATCTCAACTCCGAAA
GTTCTAACCGCAGATAAGCAAGCTGCAAAAATTGAATCAGGGACTCAAATTCCTTATTCATCTTCTACGGGTGGTGGAGC
TAATGCTGTTCCAAAAACTGAATTTATTGATGCGACCTTAAGTTTGGATGTTACACCAAGTATTACCCCTGAGGGTAAGG
TGATGATGAAATTAAACATCACCAAAGACTCACCAGGAACACCAACACCTACAGGGCAGTTGACGATTAATAAAAACACA
ATTGATACGAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATCTTCGAGCAAGAAAATATTAATTCTCA
GACCAAAGTTCCATTCTTGGGTGATTTACCTTATGTTGGGAAATTATTCCGCAGAGAGTCTAAACAAGACAATAAACGCG
AGTTGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-445)

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

AMIN domain (AMIN)

(37-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

75.62

100

0.771
  pilQ Acinetobacter baumannii D1279779

75.62

100

0.771
  comQ Acinetobacter baylyi ADP1

73.435

100

0.742
  pilQ Pseudomonas aeruginosa PAK

41.151

97.612

0.402
  pilQ Legionella pneumophila strain ERS1305867

39.556

94.803

0.375
  pilQ Legionella pneumophila strain Lp02

39.318

94.663

0.372