Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Q4617_RS01685 Genome accession   NZ_CP131470
Coordinates   356382..357122 (+) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351382..362122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS01670 (Q4617_01670) ponA 351941..354520 (-) 2580 WP_112986739.1 penicillin-binding protein PBP1a -
  Q4617_RS01675 (Q4617_01675) pilM 354683..355741 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  Q4617_RS01680 (Q4617_01680) pilN 355741..356385 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  Q4617_RS01685 (Q4617_01685) pilO 356382..357122 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q4617_RS01690 (Q4617_01690) pilP 357122..357649 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  Q4617_RS01695 (Q4617_01695) pilQ 357711..359849 (+) 2139 WP_171293826.1 type IV pilus secretin PilQ Machinery gene
  Q4617_RS01700 (Q4617_01700) aroK 359869..360429 (+) 561 WP_112986741.1 shikimate kinase AroK -
  Q4617_RS01705 (Q4617_01705) aroB 360450..361532 (+) 1083 WP_112986742.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=862541 Q4617_RS01685 WP_075696026.1 356382..357122(+) (pilO) [Acinetobacter junii strain SC22]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=862541 Q4617_RS01685 WP_075696026.1 356382..357122(+) (pilO) [Acinetobacter junii strain SC22]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAACTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAAAACATTCGCTTGGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATAGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACACGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AAACCTACCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683