Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q4617_RS01680 Genome accession   NZ_CP131470
Coordinates   355741..356385 (+) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350741..361385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS01665 (Q4617_01665) - 351108..351926 (+) 819 WP_004964610.1 putative RNA methyltransferase -
  Q4617_RS01670 (Q4617_01670) ponA 351941..354520 (-) 2580 WP_112986739.1 penicillin-binding protein PBP1a -
  Q4617_RS01675 (Q4617_01675) pilM 354683..355741 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  Q4617_RS01680 (Q4617_01680) pilN 355741..356385 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  Q4617_RS01685 (Q4617_01685) pilO 356382..357122 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q4617_RS01690 (Q4617_01690) pilP 357122..357649 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  Q4617_RS01695 (Q4617_01695) pilQ 357711..359849 (+) 2139 WP_171293826.1 type IV pilus secretin PilQ Machinery gene
  Q4617_RS01700 (Q4617_01700) aroK 359869..360429 (+) 561 WP_112986741.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=862540 Q4617_RS01680 WP_004909633.1 355741..356385(+) (pilN) [Acinetobacter junii strain SC22]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=862540 Q4617_RS01680 WP_004909633.1 355741..356385(+) (pilN) [Acinetobacter junii strain SC22]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTCGCTGCATTAGGTGTGGCGTCAGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGATTGCAAGGTCAAAGACCTGTTGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCAACCATGTATTTGACTAAATTTACACGTACAGGAGATAAGTTCACGATAGAAGGTAAAGCTGAAAGTC
CAAATACGGTTGCTGAGTTACTGAGAAATCTTGAAGCATCGCCGTGGTATCGCAATGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACTGTCAGCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGTACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WRY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72