Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q5H80_RS13070 Genome accession   NZ_CP130748
Coordinates   2937845..2939539 (-) Length   564 a.a.
NCBI ID   WP_369809718.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2932845..2944539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS13050 (Q5H80_13050) - 2933519..2934370 (-) 852 WP_304565348.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  Q5H80_RS13055 (Q5H80_13055) - 2934440..2935957 (-) 1518 WP_304565349.1 SPOR domain-containing protein -
  Q5H80_RS13060 (Q5H80_13060) aroB 2936037..2937125 (-) 1089 WP_304565351.1 3-dehydroquinate synthase -
  Q5H80_RS13065 (Q5H80_13065) aroK 2937150..2937668 (-) 519 WP_009848907.1 shikimate kinase AroK -
  Q5H80_RS13070 (Q5H80_13070) pilQ 2937845..2939539 (-) 1695 WP_369809718.1 type IV pilus secretin PilQ Machinery gene
  Q5H80_RS13075 (Q5H80_13075) pilP 2939599..2940117 (-) 519 WP_304569420.1 pilus assembly protein PilP Machinery gene
  Q5H80_RS13080 (Q5H80_13080) pilO 2940104..2940733 (-) 630 WP_304565359.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5H80_RS13085 (Q5H80_13085) pilN 2940726..2941340 (-) 615 WP_304565361.1 PilN domain-containing protein Machinery gene
  Q5H80_RS13090 (Q5H80_13090) pilM 2941324..2942349 (-) 1026 WP_304565363.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61433.02 Da        Isoelectric Point: 4.3703

>NTDB_id=861312 Q5H80_RS13070 WP_369809718.1 2937845..2939539(-) (pilQ) [Vibrio sp. SNU_ST1]
MNKRLQSLVVSVMLVVSVFSYAESLPNQLENIDFRVNKGKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQVNDDKLYL
LDVKDFATLVEGIEVYKETPSTRLLAMIAGDYQYEYNLKGRFIEVVISRPTIDEVTIEKNVLEKEGKVISINFQDIPVRN
VLQLIADYNDFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGEGTVSMLSERGSITIDERTNSLLIRELEENTAVIRGIIESLDIPVKQVQIEARIVTV
SEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSAISPYDDNGGSSLIDDYLNVNLGATSPSASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=861312 Q5H80_RS13070 WP_369809718.1 2937845..2939539(-) (pilQ) [Vibrio sp. SNU_ST1]
ATAAACAAAAGGCTACAAAGCCTAGTTGTGTCTGTGATGTTGGTGGTTAGCGTGTTCAGCTATGCCGAGAGCTTGCCAAA
TCAATTGGAAAATATTGATTTTAGGGTCAACAAGGGGAAAGACGCCGTCATCATTATCGAATTGGCAACCAGCACTGCTG
TGGTGGATGTTCAACGTGCTCAGGAAGGTTTAAGTATCGAGTTACTCAATACTCAGGTGAATGACGATAAGCTTTACCTC
CTGGATGTGAAGGACTTCGCGACCTTAGTTGAAGGTATTGAGGTGTATAAGGAAACGCCCAGTACGCGATTGTTGGCAAT
GATCGCTGGTGACTATCAATATGAATACAACTTAAAAGGTCGCTTTATTGAGGTAGTGATAAGTAGGCCTACTATTGATG
AAGTGACAATAGAGAAAAATGTTTTAGAAAAAGAAGGCAAGGTGATATCGATTAACTTCCAAGATATCCCGGTACGTAAT
GTTTTGCAGCTTATTGCTGATTACAACGATTTCAATCTCGTTGTTTCTGATTCAGTCACGGGTAATCTGACTTTACGTTT
AGATGGTGTGCCTTGGCAGCAAGTTCTCGACATAATCTTGCAAGTTAAGGGGCTAGATAAGCGTGTTGATGGCAACGTTA
TCTTGGTGGCACCTAAAGCTGAGCTCGACCTTAGAGAGCAACAAGCGCTAGAGAAATCTCGTTTGGAAGAAGAGCTAGGT
GAACTCAAGTCGGAAATCATCAAGATTAACTTTGCTAAAGCCACCGACATTGCCGACATGATTGGTGGGGAAGGGACGGT
AAGTATGTTGTCCGAGCGAGGCTCGATTACCATTGATGAGCGAACTAACTCTCTGTTGATCCGTGAATTGGAAGAAAATA
CAGCAGTGATACGAGGCATCATTGAGTCCTTGGATATCCCTGTGAAGCAAGTACAGATAGAAGCTCGCATAGTGACTGTC
AGTGAGGGTAACCTTGATGAGTTAGGGGTACGCTGGGGCGTTTCTTCAACCAACGGAAGCTTCACCGTTGGTGGCTCAAT
AGAGGGCAACCACCCATCAGCCATTTCGCCGTATGATGATAACGGGGGGAGCAGTTTGATTGATGACTATCTTAACGTTA
ATTTAGGAGCAACTTCCCCGAGCGCGTCGAGTATTGCGTTCCAGGTGGCCAAGTTGGGCTCTGATACCTTGCTCGATCTT
GAATTGTCAGCACTCCAACAAGAATCGAAAGCAGAGATTATTTCTAGCCCACGTTTAATTACCACCAATAAAAAGCCAGC
TTATATTGAGCAAGGTACTGAAATTCCTTATTTAGAGTCATCTTCAAGTGGTGCTACTTCGGTCGCATTTAAGAAAGCGG
TATTGAGTCTCAAGGTGACTCCGCAGATCACCCCCGACAATCGCTTGGTATTGGATTTAAGCGTGACTCAAGATAGGCCG
GGGCAAGTGGTGAAAACCGGCACCGGTGAAGCTGTCGCCATTGATACGCAAAGAATTGGAACGCAAGTGCTTGTTAATAA
TGGTGAAACGGTCGTGTTGGGTGGTATTTTTCAACACAGTGTGAGCAGTCAAGTTGATAAAGTTCCACTGTTAGGAGACC
TTCCTGTTCTTGGCGCATTGTTCCGTCGTAGCTATGAAAATGTAGGCAAAAGTGAACTACTTATTTTTGTTACACCTAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(404-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

78.75

99.291

0.782
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.75

99.291

0.782
  pilQ Vibrio campbellii strain DS40M4

78.843

98.05

0.773
  pilQ Legionella pneumophila strain ERS1305867

42.491

96.809

0.411
  pilQ Legionella pneumophila strain Lp02

42.491

96.809

0.411
  pilQ Pseudomonas aeruginosa PAK

41.441

98.404

0.408
  comQ Acinetobacter baylyi ADP1

39.965

100

0.402
  pilQ Acinetobacter baumannii strain A118

38.169

100

0.392
  pilQ Acinetobacter baumannii D1279779

38.169

100

0.392