Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Q5H80_RS13080 Genome accession   NZ_CP130748
Coordinates   2940104..2940733 (-) Length   209 a.a.
NCBI ID   WP_304565359.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2935104..2945733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS13060 (Q5H80_13060) aroB 2936037..2937125 (-) 1089 WP_304565351.1 3-dehydroquinate synthase -
  Q5H80_RS13065 (Q5H80_13065) aroK 2937150..2937668 (-) 519 WP_009848907.1 shikimate kinase AroK -
  Q5H80_RS13070 (Q5H80_13070) pilQ 2937845..2939539 (-) 1695 WP_369809718.1 type IV pilus secretin PilQ Machinery gene
  Q5H80_RS13075 (Q5H80_13075) pilP 2939599..2940117 (-) 519 WP_304569420.1 pilus assembly protein PilP Machinery gene
  Q5H80_RS13080 (Q5H80_13080) pilO 2940104..2940733 (-) 630 WP_304565359.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5H80_RS13085 (Q5H80_13085) pilN 2940726..2941340 (-) 615 WP_304565361.1 PilN domain-containing protein Machinery gene
  Q5H80_RS13090 (Q5H80_13090) pilM 2941324..2942349 (-) 1026 WP_304565363.1 type IV pilus assembly protein PilM Machinery gene
  Q5H80_RS13095 (Q5H80_13095) - 2942501..2945059 (+) 2559 WP_304565365.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24153.64 Da        Isoelectric Point: 4.4907

>NTDB_id=861314 Q5H80_RS13080 WP_304565359.1 2940104..2940733(-) (pilO) [Vibrio sp. SNU_ST1]
MANLQSRISWQNSVSLQDLDADEITEWPLLPQLLVILLLMVLIQGVGTWLYVLPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNALTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDEIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=861314 Q5H80_RS13080 WP_304565359.1 2940104..2940733(-) (pilO) [Vibrio sp. SNU_ST1]
ATGGCTAACCTTCAAAGTAGGATTAGCTGGCAAAATAGTGTGAGCTTACAAGACCTCGATGCTGATGAGATCACCGAATG
GCCGTTGCTGCCTCAACTGTTAGTCATTCTGTTGCTGATGGTATTAATCCAAGGTGTCGGGACTTGGCTGTATGTGCTGC
CTTTAGACGATGAACTGCAGCAGATGAAGCAGCAAGAGCAGACTTTGAAAGCAACGTTAAGGATAAAAGCGAACAAGGTT
GCAGCTTTACCTAAACTCCAGAGCCAATTAGATGAGTTAACCAGCCGCTACGACTATCTGTTAGAACAATTGCCCGTTCA
AAAGGAGTTGGCGAGCATGTTGGCCTCAGTGAATGAACTTGGTTTGGATAATGCGCTGACCTTTACGCGCATTGATTGGG
GGCAAAAGCAGAACAAGGAATTTCTCTATCGTTTACCGCTCAACATCGAGCTGACGGGTGACTACCACGAGATTGGTGAT
TTCTCTGCGGCCATTGCTAAGCTGCCGCGCATCATCAGCTTTGATGACGTGAATTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTCAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAATTCAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(59-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

76.804

92.823

0.713
  pilO Vibrio campbellii strain DS40M4

72.872

89.952

0.655