Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V70_RS08405 Genome accession   NZ_CP130549
Coordinates   1671344..1671769 (-) Length   141 a.a.
NCBI ID   WP_015978401.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA03-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1666344..1676769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V70_RS08355 - 1666418..1666723 (-) 306 WP_029051971.1 hypothetical protein -
  Q3V70_RS08360 - 1666724..1666909 (-) 186 WP_029051970.1 DUF3113 family protein -
  Q3V70_RS08365 - 1666914..1667318 (-) 405 WP_000049798.1 DUF1064 domain-containing protein -
  Q3V70_RS08370 - 1667329..1667550 (-) 222 WP_001123688.1 DUF3269 family protein -
  Q3V70_RS08375 - 1667554..1667769 (-) 216 WP_303262963.1 hypothetical protein -
  Q3V70_RS08380 - 1667766..1669006 (-) 1241 Protein_1649 DnaB helicase C-terminal domain-containing protein -
  Q3V70_RS08385 - 1669003..1669359 (-) 357 WP_001132243.1 hypothetical protein -
  Q3V70_RS08390 - 1669359..1670114 (-) 756 WP_164104442.1 DnaD domain protein -
  Q3V70_RS08395 - 1670107..1670781 (-) 675 WP_303262965.1 putative HNHc nuclease -
  Q3V70_RS08400 - 1670782..1671333 (-) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  Q3V70_RS08405 ssbA 1671344..1671769 (-) 426 WP_015978401.1 single-stranded DNA-binding protein Machinery gene
  Q3V70_RS08410 - 1671769..1672392 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  Q3V70_RS08415 - 1672385..1672606 (-) 222 WP_000815400.1 DUF2483 family protein -
  Q3V70_RS08420 - 1672616..1672876 (-) 261 WP_001644876.1 DUF1108 family protein -
  Q3V70_RS08425 - 1672857..1673186 (-) 330 WP_000138304.1 hypothetical protein -
  Q3V70_RS08430 - 1673279..1673440 (-) 162 WP_001285954.1 DUF1270 domain-containing protein -
  Q3V70_RS08435 - 1673453..1673716 (-) 264 WP_001124160.1 helix-turn-helix domain-containing protein -
  Q3V70_RS08440 - 1673741..1673956 (-) 216 WP_001097552.1 hypothetical protein -
  Q3V70_RS08445 - 1674011..1674376 (+) 366 WP_001128433.1 hypothetical protein -
  Q3V70_RS08450 - 1674345..1674590 (-) 246 WP_001025401.1 DUF2829 domain-containing protein -
  Q3V70_RS08455 - 1674640..1674858 (-) 219 WP_001001383.1 hypothetical protein -
  Q3V70_RS08460 - 1674874..1675650 (-) 777 WP_001148559.1 phage antirepressor -
  Q3V70_RS08465 - 1676074..1676688 (+) 615 WP_000801423.1 LexA family transcriptional regulator -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15947.45 Da        Isoelectric Point: 5.8790

>NTDB_id=860221 Q3V70_RS08405 WP_015978401.1 1671344..1671769(-) (ssbA) [Staphylococcus aureus strain SA03-SX]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=860221 Q3V70_RS08405 WP_015978401.1 1671344..1671769(-) (ssbA) [Staphylococcus aureus strain SA03-SX]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

74.576

83.688

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.553

100

0.426
  ssbA Streptococcus mutans UA159

41.844

100

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.915

83.688

0.376