Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I0P84_RS01775 Genome accession   NZ_AP024524
Coordinates   385837..387957 (+) Length   706 a.a.
NCBI ID   WP_214002286.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380837..392957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS01755 (RYU24_03380) pilM 382839..383897 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  I0P84_RS01760 (RYU24_03390) comN 383897..384535 (+) 639 WP_004787129.1 PilN domain-containing protein Machinery gene
  I0P84_RS01765 (RYU24_03400) comO 384532..385248 (+) 717 WP_175966241.1 type 4a pilus biogenesis protein PilO Machinery gene
  I0P84_RS01770 (RYU24_03410) pilP 385248..385775 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  I0P84_RS01775 (RYU24_03420) pilQ 385837..387957 (+) 2121 WP_214002286.1 type IV pilus secretin PilQ family protein Machinery gene
  I0P84_RS01780 (RYU24_03430) aroK 387994..388530 (+) 537 WP_214001837.1 shikimate kinase AroK -
  I0P84_RS01785 (RYU24_03440) aroB 388559..389638 (+) 1080 WP_214001838.1 3-dehydroquinate synthase -
  I0P84_RS01790 (RYU24_03450) - 389651..390502 (+) 852 WP_214001839.1 hypothetical protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 76419.49 Da        Isoelectric Point: 5.0473

>NTDB_id=85797 I0P84_RS01775 WP_214002286.1 385837..387957(+) (pilQ) [Acinetobacter variabilis strain RYU24]
MNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFNEAQQNLKQSSI
PVATAEASSVDVSSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSATPVAIAQPVQQQVAQGITNIGFQRGAQGEGLVV
IDLAGQNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQSAESYEYMAFQTDNKLTI
SLKRPEVKGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKSASGSGSSNSTSNGDDRESLL
SSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGILSQGITNNNHLLVGGS
DTTLWDLREPEVNELGGFTYDIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTADK
QKATVASGSQIPYQSAEGGGANAVSTTSFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLTINKNQINTNVL
VDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=85797 I0P84_RS01775 WP_214002286.1 385837..387957(+) (pilQ) [Acinetobacter variabilis strain RYU24]
ATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGCTGTCGCGATTGCTGTGATGCAAGCAGCGAGTGCGCAAGTTTCAAT
GACCAATGTGGTGCCAATGCAGATTCCTGGACAGGGAACTGAAATCCGAGTGATGTTTAACGGTCTGCCACCTCAGCCTC
AAGCTTATCAGCTTGAATCTCCATCACGCCTGATTCTGGATTTTAATGAGGCACAACAAAATCTAAAACAGTCTAGTATT
CCAGTCGCAACTGCTGAAGCTAGTTCAGTGGATGTTAGCTCGGATGCACAGCGTTCTCGTTTGACAGTGAATCTTGCTAA
TGCAGGTGCATTTACGACGCGTGTGGAAGGCAATACCTTTATTTTAAAAATTAATTCTGCCACTCCAGTCGCTATTGCTC
AGCCTGTACAACAGCAGGTCGCTCAGGGGATTACTAATATTGGTTTCCAGCGGGGTGCGCAAGGTGAAGGACTGGTGGTA
ATTGATCTGGCAGGTCAGAACACACCAGTCGATGTACAGCAGCAGGGAACCAAAGTGATTGTGCGGACTCTGGGCTCCAA
GATTCCGGCACATTTGACCCGACGTTTGAATGTGAATGATTTTGCCACGCCTGTTTCAACCGTAGATGCAGTCAATCAAA
ATGGTTCAGGTGTAATTACTATTCAGTCTGCAGAAAGTTATGAATATATGGCTTTCCAGACGGATAATAAGCTGACGATT
AGTTTGAAGCGTCCAGAAGTTAAGGGTCCATTACGTCCTAAATCAGTCGCTTATACAGGCAAGAAAATTTCCCTCGATTT
CCAAGATATTGAAGTCCGTCGAGTTCTACAGTTATTAGCCGATTTTACCGATATCAATATGGTTGCTGCAGATAGCGTAC
AAGGTAATATTACCTTACGCCTCAAAGAAGTGCCTTGGGATCAGGCTTTAGATATTGTGTTAAAAACTAAAAATCTGGAT
AAACGCCGTAATGGTAATGTGATCTGGATTGCACCAGTGGCAGAACTAATTAAGGCCGAAGAAGAAGAAGCGAAAGCACT
AGCACAGAGTGTTAAGCTTGCACCAATTCAAACTGAATATATGCAGCTCAGTTATGCAAAAGCAGCAGATATTGAAAAAC
TGATTACTCAAAATAAGAGTGCATCAGGATCAGGGAGCTCGAATAGCACAAGTAACGGTGATGATAGAGAAAGTTTACTA
AGTTCACGTGGTTCTATCTCTATTGATGCTCGTACCAATACCATTATTGTGAATGATACCCAGCCTTTCATTGATAAAAT
TCGTAATATGGTTGATCTGCTTGATGTCCAAGTGAAGCAGGTCATGGTTGAGGCGCGTATCGTTCGTGCAACCACTGACT
TTACCAAAGAAATGGGAGTGAAGTGGGGAATCCTATCTCAAGGGATTACCAATAATAATCACCTTCTTGTTGGTGGTAGT
GATACGACTCTTTGGGATCTCCGAGAGCCAGAAGTAAATGAGTTAGGTGGATTTACCTATGATATTCAGCGTCCGGATAA
CCTAAATGTAGATTTAGGGGTAACCAGTCAAGGTGCAAGCCGTATTGCTTTTGGCTTAATTAGCCTTTCTGATTTTATGC
TGGATCTTGAACTTTCTGCGCTACAGGCAGATGGTTATGGTGAAGTGATTTCTACGCCAAAAGTGCTCACTGCTGACAAA
CAAAAAGCAACCGTTGCCTCCGGTTCGCAAATTCCATATCAGTCTGCAGAAGGTGGTGGTGCTAATGCAGTGTCGACTAC
ATCATTTATTGATGCAACTTTAAGTCTGGACGTTACACCAAGTATTACTCCAGATGGTAAGGTGCAGATGGAATTGAATA
TTACCAGTGACTCACCAGGAAATCCGACCCCAACTGGACAGTTAACCATTAATAAAAACCAGATTAATACTAATGTGCTG
GTTGATAATGGTGAAACAGTAGTGTTAGGGGGTATTTTTGAGCAAGAAACTCGAAATGCGCAAACTAAAGTTCCGTTCTT
GGGAGATCTGCCATATTTAGGTCGTTTGTTCCGTAAAGATGTTAAATCAGATAACAAGCGTGAATTGCTGATTTTTGTTA
CACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(540-698)

AMIN domain (AMIN)

(40-122)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.806

100

0.766
  pilQ Acinetobacter baumannii strain A118

73.67

100

0.765
  comQ Acinetobacter baylyi ADP1

71.21

100

0.725
  pilQ Pseudomonas aeruginosa PAK

41.871

98.442

0.412
  pilQ Legionella pneumophila strain Lp02

37.712

100

0.378
  pilQ Legionella pneumophila strain ERS1305867

37.749

99.433

0.375

Multiple sequence alignment