Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | I0P84_RS01770 | Genome accession | NZ_AP024524 |
| Coordinates | 385248..385775 (+) | Length | 175 a.a. |
| NCBI ID | WP_034169727.1 | Uniprot ID | - |
| Organism | Acinetobacter variabilis strain RYU24 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 380248..390775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I0P84_RS01755 (RYU24_03380) | pilM | 382839..383897 (+) | 1059 | WP_004787132.1 | pilus assembly protein PilM | Machinery gene |
| I0P84_RS01760 (RYU24_03390) | comN | 383897..384535 (+) | 639 | WP_004787129.1 | PilN domain-containing protein | Machinery gene |
| I0P84_RS01765 (RYU24_03400) | comO | 384532..385248 (+) | 717 | WP_175966241.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| I0P84_RS01770 (RYU24_03410) | pilP | 385248..385775 (+) | 528 | WP_034169727.1 | pilus assembly protein PilP | Machinery gene |
| I0P84_RS01775 (RYU24_03420) | pilQ | 385837..387957 (+) | 2121 | WP_214002286.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| I0P84_RS01780 (RYU24_03430) | aroK | 387994..388530 (+) | 537 | WP_214001837.1 | shikimate kinase AroK | - |
| I0P84_RS01785 (RYU24_03440) | aroB | 388559..389638 (+) | 1080 | WP_214001838.1 | 3-dehydroquinate synthase | - |
| I0P84_RS01790 (RYU24_03450) | - | 389651..390502 (+) | 852 | WP_214001839.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19402.56 Da Isoelectric Point: 7.1662
>NTDB_id=85796 I0P84_RS01770 WP_034169727.1 385248..385775(+) (pilP) [Acinetobacter variabilis strain RYU24]
MNIIKITSALTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP
MNIIKITSALTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP
Nucleotide
Download Length: 528 bp
>NTDB_id=85796 I0P84_RS01770 WP_034169727.1 385248..385775(+) (pilP) [Acinetobacter variabilis strain RYU24]
ATGAATATCATTAAAATTACTTCAGCTTTAACGCTCGGATTTTTATTGGTGGGTTGCGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAACCACCATTACCAATTGAACCGGCGCCGGATTTTATTCCGACAGAAATGTTTA
ATTATGCAGCTCATCAGCTGAAAAGTCCTTTCCTGCCAAGCTCTTTAGCAGCCGAATTGAAAATTATGGCAGGTAAGCGG
GTTTATCCAAACTTGTCACGCCAATTACAGCCTTTAGAGAGTTATCCACTGGAAACTTTAAGCATGAAAGGCAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTTTGATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCACGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA
ATGAATATCATTAAAATTACTTCAGCTTTAACGCTCGGATTTTTATTGGTGGGTTGCGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAACCACCATTACCAATTGAACCGGCGCCGGATTTTATTCCGACAGAAATGTTTA
ATTATGCAGCTCATCAGCTGAAAAGTCCTTTCCTGCCAAGCTCTTTAGCAGCCGAATTGAAAATTATGGCAGGTAAGCGG
GTTTATCCAAACTTGTCACGCCAATTACAGCCTTTAGAGAGTTATCCACTGGAAACTTTAAGCATGAAAGGCAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTTTGATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCACGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Acinetobacter baumannii D1279779 |
77.714 |
100 |
0.777 |
| comL | Acinetobacter baylyi ADP1 |
71.598 |
96.571 |
0.691 |