Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   I0P84_RS01765 Genome accession   NZ_AP024524
Coordinates   384532..385248 (+) Length   238 a.a.
NCBI ID   WP_175966241.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379532..390248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS01750 (RYU24_03370) ponA 380144..382672 (-) 2529 WP_175966243.1 penicillin-binding protein PBP1a -
  I0P84_RS01755 (RYU24_03380) pilM 382839..383897 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  I0P84_RS01760 (RYU24_03390) comN 383897..384535 (+) 639 WP_004787129.1 PilN domain-containing protein Machinery gene
  I0P84_RS01765 (RYU24_03400) comO 384532..385248 (+) 717 WP_175966241.1 type 4a pilus biogenesis protein PilO Machinery gene
  I0P84_RS01770 (RYU24_03410) pilP 385248..385775 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  I0P84_RS01775 (RYU24_03420) pilQ 385837..387957 (+) 2121 WP_214002286.1 type IV pilus secretin PilQ family protein Machinery gene
  I0P84_RS01780 (RYU24_03430) aroK 387994..388530 (+) 537 WP_214001837.1 shikimate kinase AroK -
  I0P84_RS01785 (RYU24_03440) aroB 388559..389638 (+) 1080 WP_214001838.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26993.58 Da        Isoelectric Point: 4.7609

>NTDB_id=85795 I0P84_RS01765 WP_175966241.1 384532..385248(+) (comO) [Acinetobacter variabilis strain RYU24]
MSNDGFDELSQDVGTVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIVILVFMLGYFGFIRGKIEAISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNADASSTPATTDTQGAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=85795 I0P84_RS01765 WP_175966241.1 384532..385248(+) (comO) [Acinetobacter variabilis strain RYU24]
ATGAGTAATGACGGATTCGATGAATTAAGCCAAGACGTAGGGACTGTTCCTAGAAAAAAAATGACAGTTGAAAAGTTCTT
TCAACAATTCAATACACTAGATCCAAATAATTATGGTAGCTGGCCATTATCAGTCAAAATTACCTGCTGGATCTTTATTG
TTATTCTGGTTTTTATGCTGGGGTATTTCGGGTTTATTCGCGGCAAGATAGAAGCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGTTAAATGAATTCCGGGAAAAGGAATCCAAGCTGCGTAATTTACAGCAGTATCAGATTCAGTTGCAGGAGAT
GGAAGCACGTTTTAATCAGCAATTGGAACAATTGCCGAAAGAAACTGAAATTCCTGGTCTGGTTGAAGATATTAACCTGA
GTGGAGTGAACTCCGGACTGAAATTCAAAAATATTCGTCTGGAACCTGAAATCAAGCAGGAATTCTTTATTGAACAACCA
ATCGCTATTGAAGCCACTGGGGATTATCATGCCTTTGGTTCTTTTGTGAGCAGTATTGCAGGACTTTCGCGCATCGTTAC
ACTGCATGACTTCACCATTACAGGGACTGAAAATAAAGAAAAGAAATCTGAAATTCCTGTCATTGATTATGTGGTAAAAG
CGAAAACCTATCGTTATGTTGGTAATGCAGATGCTTCATCTACTCCAGCCACAACTGATACGCAGGGAGCTCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

68.033

100

0.697
  pilO Acinetobacter baumannii D1279779

72.124

94.958

0.685

Multiple sequence alignment