Detailed information
Bioinformatically predicted
Overview
| Name | comN | Type | Machinery gene |
| Locus tag | I0P84_RS01760 | Genome accession | NZ_AP024524 |
| Coordinates | 383897..384535 (+) | Length | 212 a.a. |
| NCBI ID | WP_004787129.1 | Uniprot ID | N8WR61 |
| Organism | Acinetobacter variabilis strain RYU24 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 378897..389535
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I0P84_RS01745 (RYU24_03360) | - | 379282..380085 (+) | 804 | WP_175966244.1 | putative RNA methyltransferase | - |
| I0P84_RS01750 (RYU24_03370) | ponA | 380144..382672 (-) | 2529 | WP_175966243.1 | penicillin-binding protein PBP1a | - |
| I0P84_RS01755 (RYU24_03380) | pilM | 382839..383897 (+) | 1059 | WP_004787132.1 | pilus assembly protein PilM | Machinery gene |
| I0P84_RS01760 (RYU24_03390) | comN | 383897..384535 (+) | 639 | WP_004787129.1 | PilN domain-containing protein | Machinery gene |
| I0P84_RS01765 (RYU24_03400) | comO | 384532..385248 (+) | 717 | WP_175966241.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| I0P84_RS01770 (RYU24_03410) | pilP | 385248..385775 (+) | 528 | WP_034169727.1 | pilus assembly protein PilP | Machinery gene |
| I0P84_RS01775 (RYU24_03420) | pilQ | 385837..387957 (+) | 2121 | WP_214002286.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| I0P84_RS01780 (RYU24_03430) | aroK | 387994..388530 (+) | 537 | WP_214001837.1 | shikimate kinase AroK | - |
Sequence
Protein
Download Length: 212 a.a. Molecular weight: 23776.99 Da Isoelectric Point: 4.7909
>NTDB_id=85794 I0P84_RS01760 WP_004787129.1 383897..384535(+) (comN) [Acinetobacter variabilis strain RYU24]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVISTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPVTTTAEASS
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVISTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPVTTTAEASS
Nucleotide
Download Length: 639 bp
>NTDB_id=85794 I0P84_RS01760 WP_004787129.1 383897..384535(+) (comN) [Acinetobacter variabilis strain RYU24]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGTGCCGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTATTACGATCAAAAACTTCAGGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGTTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTTTACAGACTCAACGGCCGATCGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAAGCAATATGTACATTACCAAATTCCAGCGTACCGGCGATAAATTCACCATTGAAGGTAAGGCGGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAGGCTTCTACCTGGTATCGTAATGCATTTATGAATGCTTTCCTGGTT
GCTGAAGAACCAAAAGATAAAGCGCCATCATCAGTGATTCCTCGAGTGGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGTCACAACTACAGCGGAGGCATCATCATGA
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGTGCCGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTATTACGATCAAAAACTTCAGGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGTTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTTTACAGACTCAACGGCCGATCGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAAGCAATATGTACATTACCAAATTCCAGCGTACCGGCGATAAATTCACCATTGAAGGTAAGGCGGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAGGCTTCTACCTGGTATCGTAATGCATTTATGAATGCTTTCCTGGTT
GCTGAAGAACCAAAAGATAAAGCGCCATCATCAGTGATTCCTCGAGTGGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGTCACAACTACAGCGGAGGCATCATCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comN | Acinetobacter baylyi ADP1 |
70.531 |
97.642 |
0.689 |
| pilN | Acinetobacter baumannii D1279779 |
68.293 |
96.698 |
0.66 |