Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Q3F87_RS02560 Genome accession   NZ_CP130328
Coordinates   360317..362482 (+) Length   721 a.a.
NCBI ID   WP_302700347.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355317..367482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02540 (Q3F87_02540) pilM 357364..358422 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  Q3F87_RS02545 (Q3F87_02545) comN 358422..359060 (+) 639 WP_179992180.1 PilN domain-containing protein Machinery gene
  Q3F87_RS02550 (Q3F87_02550) comO 359057..359773 (+) 717 WP_159122691.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q3F87_RS02555 (Q3F87_02555) pilP 359773..360300 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  Q3F87_RS02560 (Q3F87_02560) pilQ 360317..362482 (+) 2166 WP_302700347.1 type IV pilus secretin PilQ family protein Machinery gene
  Q3F87_RS02565 (Q3F87_02565) aroK 362519..363055 (+) 537 WP_005233593.1 shikimate kinase AroK -
  Q3F87_RS02570 (Q3F87_02570) aroB 363084..364163 (+) 1080 WP_302700349.1 3-dehydroquinate synthase -
  Q3F87_RS02575 (Q3F87_02575) - 364175..365026 (+) 852 WP_302700350.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78146.38 Da        Isoelectric Point: 4.9917

>NTDB_id=857879 Q3F87_RS02560 WP_302700347.1 360317..362482(+) (pilQ) [Acinetobacter variabilis strain TB2-2B]
MNKSIKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFNEAQQNLKQSSIPVATAEASSVDVSSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSATPVAIAQPVQQQVAQGIT
NIGFQRGAQGEGLVVIDLAGQNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSSVDAVNQNGSGVITIQSAE
SYEYMAFQTDNKLTISLKRPEVRGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKSASGSG
SSNSTSNGDDRESLLSSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNNHLLVGGSDTTLWDLRDPQESDLGGFTYDIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPT
GQLTINKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=857879 Q3F87_RS02560 WP_302700347.1 360317..362482(+) (pilQ) [Acinetobacter variabilis strain TB2-2B]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
TGTCGCGATTGCTGTGATGCAAGCAGCGAGTGCGCAAGTTTCAATGACCAATGTAGTGCCAATGCAAATTCCTGGACAGG
GAACTGAAATCCGGGTGATGTTTAATGGCTTGCCACCTCAGCCTCAAGCTTATCAGCTTGAATCTCCATCACGCCTGATT
CTGGATTTTAATGAGGCCCAACAAAATCTAAAACAGTCTAGTATTCCAGTCGCAACTGCTGAAGCCAGTTCAGTGGATGT
TAGCTCAGATGCACAGCGTTCTCGACTGACGGTGAATCTCGCTAATGCAGGTGCATTTACGACGCGTGTGGAAGGCAATA
CCTTTATTTTAAAAATTAATTCTGCTACTCCAGTCGCTATTGCTCAGCCTGTACAACAACAGGTCGCTCAGGGGATTACT
AATATTGGTTTCCAGCGGGGTGCGCAAGGTGAAGGACTGGTGGTAATTGATCTGGCAGGTCAGAACACACCAGTCGATGT
ACAGCAGCAGGGAACCAAAGTGATTGTGCGGACTCTGGGCTCCAAGATTCCGGCACATTTGACCCGTCGCTTAAATGTGA
ATGATTTTGCTACACCAGTTTCGAGTGTAGACGCAGTCAATCAGAATGGCTCAGGTGTAATTACTATTCAATCTGCGGAA
AGCTATGAATATATGGCTTTTCAAACTGATAATAAGCTGACGATTAGTTTGAAGCGTCCAGAAGTTAGAGGGCCTTTACG
TCCTAAATCAGTCGCTTATACAGGCAAGAAAATTTCCCTCGATTTCCAAGATATTGAAGTCCGTCGAGTTCTACAGTTAT
TAGCCGATTTTACCGATATCAATATGGTTGCTGCAGATAGCGTACAAGGTAATATTACCTTACGCCTCAAAGAAGTGCCT
TGGGATCAGGCTTTAGATATTGTGTTAAAAACTAAAAATCTGGATAAACGCCGTAATGGTAATGTGATCTGGATTGCACC
GGTGGCAGAACTAATTAAGGCCGAAGAAGAAGAAGCGAAAGCACTAGCACAGAGTGTTAAGCTTGCACCAATTCAAACTG
AATATATGCAGCTCAGTTATGCAAAAGCAGCAGATATTGAAAAACTGATTACTCAAAATAAGAGTGCATCAGGATCAGGG
AGCTCGAATAGCACAAGTAACGGTGATGATAGAGAAAGTTTATTAAGTTCACGTGGCTCTATCTCCATTGATGCTCGTAC
CAATACCATTATTGTGAATGATACTCAGCCTTTCATTGATAAAATCCGTAATATGGTGGATTTGCTTGATGTGCAAGTGA
AGCAGGTGATGGTTGAGGCACGTATCGTTCGTGCAACCACTGACTTTACTAAAGAAATGGGTGTGAAATGGGGAATCCTG
TCTCAAGGGATTACCAATAATAATCACCTTCTTGTGGGGGGGAGTGATACTACCCTATGGGATTTGAGAGATCCTCAAGA
AAGTGATTTAGGCGGATTTACCTATGATATTCAACGCCCAGATAACCTGAATGTAGATTTAGGTGTCACTAGTCAGGGGG
CTAGCCGTATTGCTTTTGGCTTAATTAGCCTTTCGGATTTTATGCTGGATCTTGAACTTTCTGCGCTACAGGCAGACGGT
TATGGTGAAGTGATTTCTACGCCAAAAGTGCTCACTGCTGACAAGCAAAAAGCGACTGTGGCATCTGGTTCACAAATTCC
TTATCAGTCCGCAGAAGGCGGTGGTGCTAATGCAGTGTCGACTACAGAATTTATTGATGCAACTTTAAGTTTAGATGTGA
CACCAAGTATTACCCCAGATGGCAAGGTACAGATGGAGTTGAATATTACCAGTGACTCACCAGGGAATCCGACACCCACT
GGACAGTTAACCATTAATAAAAACCAGATCAATACTAATGTACTGGTTGATAATGGTGAAACAGTGGTGCTAGGGGGTAT
TTTTGAGCAAGAAACTCGAAATGCACAAACTAAAGTTCCTTTCTTGGGAGATCTTCCATATTTAGGTCGTTTGTTCCGTA
AAGATGTAAAATCAGATAACAAGCGTGAGTTACTGATTTTTGTTACGCCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

AMIN domain (AMIN)

(55-137)

Secretin and TonB N terminus short domain (STN)

(305-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.397

100

0.746
  pilQ Acinetobacter baumannii strain A118

73.261

100

0.745
  comQ Acinetobacter baylyi ADP1

71.071

99.723

0.709
  pilQ Pseudomonas aeruginosa PAK

41.523

96.533

0.401
  pilQ Legionella pneumophila strain Lp02

37.853

98.197

0.372
  pilQ Legionella pneumophila strain ERS1305867

37.892

97.365

0.369