Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   Q3F87_RS02545 Genome accession   NZ_CP130328
Coordinates   358422..359060 (+) Length   212 a.a.
NCBI ID   WP_179992180.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353422..364060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02530 (Q3F87_02530) - 353807..354610 (+) 804 WP_180104160.1 putative RNA methyltransferase -
  Q3F87_RS02535 (Q3F87_02535) ponA 354669..357197 (-) 2529 WP_302700346.1 penicillin-binding protein PBP1a -
  Q3F87_RS02540 (Q3F87_02540) pilM 357364..358422 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  Q3F87_RS02545 (Q3F87_02545) comN 358422..359060 (+) 639 WP_179992180.1 PilN domain-containing protein Machinery gene
  Q3F87_RS02550 (Q3F87_02550) comO 359057..359773 (+) 717 WP_159122691.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q3F87_RS02555 (Q3F87_02555) pilP 359773..360300 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  Q3F87_RS02560 (Q3F87_02560) pilQ 360317..362482 (+) 2166 WP_302700347.1 type IV pilus secretin PilQ family protein Machinery gene
  Q3F87_RS02565 (Q3F87_02565) aroK 362519..363055 (+) 537 WP_005233593.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23704.89 Da        Isoelectric Point: 4.7909

>NTDB_id=857876 Q3F87_RS02545 WP_179992180.1 358422..359060(+) (comN) [Acinetobacter variabilis strain TB2-2B]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVVSTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPGNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPATTTAEASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=857876 Q3F87_RS02545 WP_179992180.1 358422..359060(+) (comN) [Acinetobacter variabilis strain TB2-2B]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGCGCAGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTACTATGATCAAAAACTTCAGGATCAGGAACAGGCCA
ACCAGCTGGTGGTCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGTTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTCTACAGACTCAACGACCGATCGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAGGCAATATGTACATTACAAAATTTCAGCGTACCGGCGATAAATTCACCATTGAAGGTAAGGCAGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAAGCTTCCACCTGGTATCGTAATGCATTTATGAATGCTTTTCTGGTT
GCTGAAGAGCCAAAAGATAAAGCGCCATCCTCAGTGATTCCTCGAGTAGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGCCACAACTACAGCGGAGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

70.048

97.642

0.684
  pilN Acinetobacter baumannii D1279779

67.805

96.698

0.656