Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   Q3F87_RS02555 Genome accession   NZ_CP130328
Coordinates   359773..360300 (+) Length   175 a.a.
NCBI ID   WP_034169727.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354773..365300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02540 (Q3F87_02540) pilM 357364..358422 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  Q3F87_RS02545 (Q3F87_02545) comN 358422..359060 (+) 639 WP_179992180.1 PilN domain-containing protein Machinery gene
  Q3F87_RS02550 (Q3F87_02550) comO 359057..359773 (+) 717 WP_159122691.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q3F87_RS02555 (Q3F87_02555) pilP 359773..360300 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  Q3F87_RS02560 (Q3F87_02560) pilQ 360317..362482 (+) 2166 WP_302700347.1 type IV pilus secretin PilQ family protein Machinery gene
  Q3F87_RS02565 (Q3F87_02565) aroK 362519..363055 (+) 537 WP_005233593.1 shikimate kinase AroK -
  Q3F87_RS02570 (Q3F87_02570) aroB 363084..364163 (+) 1080 WP_302700349.1 3-dehydroquinate synthase -
  Q3F87_RS02575 (Q3F87_02575) - 364175..365026 (+) 852 WP_302700350.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19402.56 Da        Isoelectric Point: 7.1662

>NTDB_id=857878 Q3F87_RS02555 WP_034169727.1 359773..360300(+) (pilP) [Acinetobacter variabilis strain TB2-2B]
MNIIKITSALTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=857878 Q3F87_RS02555 WP_034169727.1 359773..360300(+) (pilP) [Acinetobacter variabilis strain TB2-2B]
ATGAATATCATTAAAATTACTTCAGCTTTAACGCTCGGATTTTTATTGGTGGGCTGCGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGCAATCAACCGCCATTACCGATTGAGCCGGCACCAGATTTTATTCCGACAGAAATGTTTA
ATTACGCAGCTCATCAGCTGAAAAGTCCTTTCCTGCCGAGCTCTTTAGCGGCTGAATTGAAAATTATGGCAGGTAAGCGA
GTTTATCCGAACTTGTCACGCCAATTACAGCCTTTAGAAAGCTATCCACTCGAAACCTTAAGCATGAAAGGCAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTTTGATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCACGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

71.598

96.571

0.691