Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   Q3F87_RS02550 Genome accession   NZ_CP130328
Coordinates   359057..359773 (+) Length   238 a.a.
NCBI ID   WP_159122691.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354057..364773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02535 (Q3F87_02535) ponA 354669..357197 (-) 2529 WP_302700346.1 penicillin-binding protein PBP1a -
  Q3F87_RS02540 (Q3F87_02540) pilM 357364..358422 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  Q3F87_RS02545 (Q3F87_02545) comN 358422..359060 (+) 639 WP_179992180.1 PilN domain-containing protein Machinery gene
  Q3F87_RS02550 (Q3F87_02550) comO 359057..359773 (+) 717 WP_159122691.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q3F87_RS02555 (Q3F87_02555) pilP 359773..360300 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  Q3F87_RS02560 (Q3F87_02560) pilQ 360317..362482 (+) 2166 WP_302700347.1 type IV pilus secretin PilQ family protein Machinery gene
  Q3F87_RS02565 (Q3F87_02565) aroK 362519..363055 (+) 537 WP_005233593.1 shikimate kinase AroK -
  Q3F87_RS02570 (Q3F87_02570) aroB 363084..364163 (+) 1080 WP_302700349.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27035.73 Da        Isoelectric Point: 4.7609

>NTDB_id=857877 Q3F87_RS02550 WP_159122691.1 359057..359773(+) (comO) [Acinetobacter variabilis strain TB2-2B]
MSNDGFDELSQDVVAVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIVILVFMLGYFGFIRGKIEAISQASAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNADASSTPATTDMQGAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=857877 Q3F87_RS02550 WP_159122691.1 359057..359773(+) (comO) [Acinetobacter variabilis strain TB2-2B]
ATGAGTAATGACGGATTCGATGAATTAAGCCAAGACGTAGTGGCTGTTCCTAGAAAAAAAATGACAGTTGAGAAATTCTT
TCAACAATTCAATACACTAGATCCAAATAATTATGGTAGCTGGCCATTATCAGTCAAAATTACCTGCTGGATCTTTATTG
TTATTCTGGTTTTTATGCTGGGGTATTTCGGGTTTATTCGCGGCAAGATAGAAGCAATTTCACAAGCCAGTGCTCAAGAA
CAAAACCTGTTAAATGAATTCCGGGAAAAGGAATCCAAGCTGCGTAATTTACAGCAGTATCAGATTCAGTTGCAGGAGAT
GGAAGCACGCTTTAATCAGCAATTGGAACAACTGCCGAAAGAAACTGAAATTCCTGGCCTGGTTGAAGATATTAACCTGA
GTGGGGTGAACTCTGGACTGAAATTCAAGAATATTCGTCTTGAACCTGAAATCAAGCAGGAATTCTTTATTGAACAGCCA
ATCGCGATTGAAGCCACTGGGGATTATCATGCCTTTGGTTCTTTTGTGAGCAGTATTGCAGGGCTTTCGCGCATCGTTAC
ACTGCATGACTTCACGATTACGGGAACTGAAAATAAAGAAAAGAAATCTGAAATTCCTGTCATTGATTATGTGGTAAAAG
CAAAAACCTATCGGTATGTAGGTAATGCAGATGCTTCATCTACTCCGGCTACAACTGATATGCAGGGAGCTCAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.623

100

0.693
  pilO Acinetobacter baumannii D1279779

72.124

94.958

0.685