Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYS58_RS11010 Genome accession   NZ_CP130143
Coordinates   2325388..2326623 (+) Length   411 a.a.
NCBI ID   WP_302138764.1    Uniprot ID   -
Organism   Halomonas alkalicola strain M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2320388..2331623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS58_RS10995 - 2320967..2322640 (+) 1674 WP_302138759.1 PglL family O-oligosaccharyltransferase -
  QYS58_RS11000 - 2322703..2323260 (-) 558 WP_367185162.1 pilin -
  QYS58_RS11005 pilB 2323521..2325335 (+) 1815 WP_302138762.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYS58_RS11010 pilC 2325388..2326623 (+) 1236 WP_302138764.1 type II secretion system F family protein Machinery gene
  QYS58_RS11015 pilD 2326631..2327485 (+) 855 WP_302143150.1 A24 family peptidase Machinery gene
  QYS58_RS11020 - 2327807..2328385 (-) 579 WP_119020348.1 hypoxanthine-guanine phosphoribosyltransferase -
  QYS58_RS11025 nagZ 2328431..2329438 (-) 1008 WP_302138769.1 beta-N-acetylhexosaminidase -
  QYS58_RS11030 - 2329583..2330257 (-) 675 WP_302138771.1 TetR/AcrR family transcriptional regulator -
  QYS58_RS11035 lexA 2330477..2331127 (+) 651 WP_302138773.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44963.71 Da        Isoelectric Point: 9.9380

>NTDB_id=857325 QYS58_RS11010 WP_302138764.1 2325388..2326623(+) (pilC) [Halomonas alkalicola strain M2]
MATARKLRPNQKVKLYRWNWSGKGPGGRKVGGEIIAAQKLEVERTLQGQNIIVKSIKRKGGFGGGMGKIGPRDVMLFARQ
MSTMIRSGVPLLQGLQVVAESLKKPAMSAMVQEVMNDVAAGASFSDALKRHPQHFDRLFCNLVEAGEQSGSLDRMLDRVA
TYKEKVESLKGRVKKALWYPAAVIAVGIGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFAQAYWWWGVLGVAA
LIFFIRTGMKKSEAFAYRMHAWSLKIPVIGQILDKSAVARYSRTLSTTFAAGVPLVEALDTASGATGNKVYERAVEQIRE
DVATGQQLAFAMRMTEQFPPLAIQMVGIGEEAGSLDAMLNRVADYYEEEVDNMVDTLTSLLEPFIIVVLGVLVGGLVISM
YLPIFELGSVI

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=857325 QYS58_RS11010 WP_302138764.1 2325388..2326623(+) (pilC) [Halomonas alkalicola strain M2]
ATGGCCACAGCACGGAAACTGCGCCCCAACCAGAAGGTCAAGCTCTATCGCTGGAACTGGAGCGGCAAGGGGCCAGGCGG
GCGCAAGGTGGGGGGCGAGATCATCGCCGCCCAGAAGTTGGAGGTTGAACGCACTCTCCAGGGCCAGAACATCATCGTCA
AGAGCATCAAGCGCAAGGGCGGCTTCGGCGGTGGCATGGGCAAGATCGGCCCCCGGGACGTGATGCTGTTCGCCCGCCAG
ATGTCCACCATGATCCGCTCGGGCGTGCCGCTGCTGCAGGGCCTCCAGGTGGTGGCGGAGAGCCTCAAGAAGCCGGCCAT
GAGCGCCATGGTGCAGGAGGTGATGAACGACGTGGCCGCCGGCGCCTCGTTTTCCGATGCCCTGAAGCGCCACCCCCAGC
ACTTCGACCGCCTGTTCTGCAACCTGGTGGAGGCCGGAGAGCAGTCCGGCTCGCTGGACCGCATGCTCGACCGGGTCGCC
ACCTACAAGGAGAAGGTGGAGTCGCTCAAGGGACGCGTGAAGAAGGCGCTCTGGTACCCCGCGGCGGTGATCGCGGTGGG
TATCGGCGTCACTGCACTGCTCTTGATCAAGGTGGTGCCGCAGTTCGAGAGCCTGTTCCATGGCTTCGGCGCTGAGCTGC
CCGCCATGACCCGCATGACCATCGCCCTCTCCGAGTTCGCCCAGGCCTACTGGTGGTGGGGGGTGCTGGGGGTGGCCGCC
CTGATCTTCTTCATCCGCACCGGAATGAAGAAGTCCGAGGCCTTCGCCTACCGCATGCACGCCTGGTCGCTGAAGATTCC
GGTCATCGGTCAGATCCTCGATAAATCGGCCGTGGCGCGCTATTCGCGTACCCTCTCCACCACCTTCGCCGCCGGTGTGC
CGCTGGTGGAGGCCCTGGATACGGCCTCAGGCGCCACCGGCAACAAGGTCTACGAACGCGCGGTCGAGCAGATCCGTGAG
GACGTGGCCACCGGGCAGCAGCTGGCCTTTGCCATGCGCATGACCGAGCAGTTCCCGCCGCTCGCCATCCAGATGGTCGG
CATCGGCGAGGAGGCGGGCTCGCTCGACGCCATGCTCAACCGCGTGGCCGACTACTACGAGGAGGAGGTCGACAATATGG
TCGACACCCTCACCTCGCTGCTGGAACCCTTCATCATCGTGGTGCTCGGCGTGCTGGTGGGCGGGCTCGTCATCTCCATG
TACCTGCCGATCTTCGAGCTGGGCTCAGTGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.87

97.567

0.506
  pilC Legionella pneumophila strain ERS1305867

51.621

97.567

0.504
  pilC Acinetobacter baumannii D1279779

51.889

96.594

0.501
  pilC Acinetobacter baylyi ADP1

51.385

96.594

0.496
  pilC Vibrio campbellii strain DS40M4

43.284

97.81

0.423
  pilC Vibrio cholerae strain A1552

42.647

99.27

0.423
  pilG Neisseria gonorrhoeae MS11

41.667

96.35

0.401
  pilG Neisseria meningitidis 44/76-A

41.667

96.35

0.401
  pilC Thermus thermophilus HB27

37.75

97.324

0.367