Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QYS58_RS11015 Genome accession   NZ_CP130143
Coordinates   2326631..2327485 (+) Length   284 a.a.
NCBI ID   WP_302143150.1    Uniprot ID   -
Organism   Halomonas alkalicola strain M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2321631..2332485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS58_RS11000 - 2322703..2323260 (-) 558 WP_367185162.1 pilin -
  QYS58_RS11005 pilB 2323521..2325335 (+) 1815 WP_302138762.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYS58_RS11010 pilC 2325388..2326623 (+) 1236 WP_302138764.1 type II secretion system F family protein Machinery gene
  QYS58_RS11015 pilD 2326631..2327485 (+) 855 WP_302143150.1 A24 family peptidase Machinery gene
  QYS58_RS11020 - 2327807..2328385 (-) 579 WP_119020348.1 hypoxanthine-guanine phosphoribosyltransferase -
  QYS58_RS11025 nagZ 2328431..2329438 (-) 1008 WP_302138769.1 beta-N-acetylhexosaminidase -
  QYS58_RS11030 - 2329583..2330257 (-) 675 WP_302138771.1 TetR/AcrR family transcriptional regulator -
  QYS58_RS11035 lexA 2330477..2331127 (+) 651 WP_302138773.1 transcriptional repressor LexA -
  QYS58_RS11040 dinB 2331148..2332197 (+) 1050 WP_302138775.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 30777.08 Da        Isoelectric Point: 7.9221

>NTDB_id=857326 QYS58_RS11015 WP_302143150.1 2326631..2327485(+) (pilD) [Halomonas alkalicola strain M2]
MLLDLPPSLLWPLAAFVGLCLGSFLNVVIVRLPVMLMQGWRAEAREALELPGETQPRFNLATPRSMCPSCETPIAWHDNL
PVLGWLKRRGRCANCDAAISPQYPLVELAGGALTLAVVALFGPSWQGLFVLGACLALLAMAVIDLRTQLLPDILTLPLLW
AGLLYQLLFQPLLLSSAVIGAMAGYLTLWSFYWAFKLITGKEGMGYGDFKLLAALGAWMGWQYLPLLLILSAGIGAIIGI
LVQLAVPRLRGAPMPFGPYLALAGWVALLAGEPLMAAYGRFFML

Nucleotide


Download         Length: 855 bp        

>NTDB_id=857326 QYS58_RS11015 WP_302143150.1 2326631..2327485(+) (pilD) [Halomonas alkalicola strain M2]
ATCTTGCTCGACCTTCCCCCTTCCCTGCTCTGGCCCCTGGCCGCCTTTGTCGGCCTGTGCCTCGGCAGCTTCCTCAACGT
GGTGATCGTGCGCCTGCCGGTGATGCTGATGCAGGGCTGGCGGGCCGAGGCCCGCGAGGCGCTGGAGCTGCCGGGTGAGA
CGCAGCCGAGATTCAACCTGGCCACGCCGCGCTCGATGTGCCCGAGCTGCGAGACCCCCATCGCCTGGCACGACAACCTC
CCGGTGCTGGGCTGGCTCAAGCGCCGCGGGCGCTGCGCGAACTGCGATGCGGCCATCAGCCCCCAGTACCCCCTGGTGGA
ACTGGCCGGCGGGGCGCTGACGCTCGCCGTGGTGGCGCTGTTCGGGCCGAGCTGGCAGGGGCTCTTCGTGCTGGGAGCCT
GCCTGGCGCTGCTCGCCATGGCGGTGATCGACCTGCGCACCCAGCTCCTGCCGGACATCCTCACCCTGCCGCTGCTCTGG
GCGGGGCTTCTCTATCAGCTGCTGTTCCAGCCGCTACTGCTTTCGAGCGCGGTGATCGGCGCCATGGCGGGGTATCTCAC
GCTGTGGAGCTTCTACTGGGCGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTGGCCG
CGCTGGGCGCCTGGATGGGCTGGCAATATCTGCCGCTGCTGCTGATCCTCTCCGCGGGGATCGGCGCCATCATCGGCATC
CTGGTGCAGCTGGCGGTGCCGCGGCTGCGCGGCGCCCCCATGCCCTTCGGGCCCTATCTGGCGCTGGCGGGCTGGGTGGC
GCTGCTGGCCGGGGAGCCGCTGATGGCGGCCTATGGAAGGTTCTTCATGCTGTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-119)

Type IV leader peptidase family (Peptidase_A24)

(134-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.137

95.423

0.507
  pilD Vibrio campbellii strain DS40M4

48.929

98.592

0.482
  pilD Acinetobacter baumannii D1279779

49.27

96.479

0.475
  pilD Acinetobacter nosocomialis M2

48.889

95.07

0.465
  pilD Neisseria gonorrhoeae MS11

45.522

94.366

0.43