Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   STYK_RS02125 Genome accession   NZ_AP024523
Coordinates   402032..402427 (+) Length   131 a.a.
NCBI ID   WP_261805144.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 397032..407427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS02100 (STYK_03790) - 398730..399806 (+) 1077 WP_192851948.1 N-acetylmuramoyl-L-alanine amidase family protein -
  STYK_RS02105 (STYK_03800) - 399897..400196 (+) 300 WP_084923435.1 DUF4651 domain-containing protein -
  STYK_RS02110 (STYK_03810) - 400193..400510 (+) 318 WP_000615777.1 thioredoxin family protein -
  STYK_RS02115 (STYK_03820) ytpR 400525..401151 (+) 627 WP_084923434.1 YtpR family tRNA-binding protein -
  STYK_RS02120 (STYK_03830) - 401193..401954 (+) 762 WP_261805143.1 SDR family NAD(P)-dependent oxidoreductase -
  STYK_RS02125 (STYK_03840) ssbB/cilA 402032..402427 (+) 396 WP_261805144.1 single-stranded DNA-binding protein Machinery gene
  STYK_RS02130 (STYK_03850) groES 402583..402867 (+) 285 WP_261805145.1 co-chaperone GroES -
  STYK_RS02135 (STYK_03860) groL 402883..404505 (+) 1623 WP_143952463.1 chaperonin GroEL -
  STYK_RS02140 (STYK_03870) - 404644..405411 (+) 768 WP_261019251.1 epoxyqueuosine reductase QueH -
  STYK_RS02145 (STYK_03880) - 405482..406015 (-) 534 WP_261805146.1 DUF402 domain-containing protein -
  STYK_RS02150 (STYK_03890) recX 406104..406880 (-) 777 WP_261805147.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.85 Da        Isoelectric Point: 5.9409

>NTDB_id=85732 STYK_RS02125 WP_261805144.1 402032..402427(+) (ssbB/cilA) [Streptococcus toyakuensis strain TP1632]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAIRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=85732 STYK_RS02125 WP_261805144.1 402032..402427(+) (ssbB/cilA) [Streptococcus toyakuensis strain TP1632]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTTT
GGGGTAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTTATTTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTGACTGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATTCGTGAAAATAATGCAGGACAGGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae Rx1

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae R6

99.237

100

0.992
  ssbB/cilA Streptococcus pneumoniae TIGR4

98.473

100

0.985
  ssbB/cilA Streptococcus mitis SK321

97.71

100

0.977
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

49.057

80.916

0.397

Multiple sequence alignment