Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QZH48_RS01990 Genome accession   NZ_CP129879
Coordinates   399212..399601 (+) Length   129 a.a.
NCBI ID   WP_038599186.1    Uniprot ID   A0AAP8E400
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 394212..404601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS01965 (QZH48_01965) pepA 395095..396162 (-) 1068 WP_058205996.1 glutamyl aminopeptidase -
  QZH48_RS01970 (QZH48_01970) - 396265..396549 (+) 285 WP_038599177.1 hypothetical protein -
  QZH48_RS01975 (QZH48_01975) - 396591..396908 (+) 318 WP_301675776.1 thioredoxin family protein -
  QZH48_RS01980 (QZH48_01980) ytpR 396994..397620 (+) 627 WP_098393170.1 YtpR family tRNA-binding protein -
  QZH48_RS01985 (QZH48_01985) nox 397782..399122 (+) 1341 WP_098393171.1 H2O-forming NADH oxidase -
  QZH48_RS01990 (QZH48_01990) ssbB 399212..399601 (+) 390 WP_038599186.1 single-stranded DNA-binding protein Machinery gene
  QZH48_RS01995 (QZH48_01995) groES 399721..400005 (+) 285 WP_003131589.1 co-chaperone GroES -
  QZH48_RS02000 (QZH48_02000) groL 400092..401720 (+) 1629 WP_003131585.1 chaperonin GroEL -
  QZH48_RS02005 (QZH48_02005) - 401764..402576 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase -
  QZH48_RS02010 (QZH48_02010) - 402747..404189 (-) 1443 WP_058206000.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14702.82 Da        Isoelectric Point: 8.3705

>NTDB_id=856109 QZH48_RS01990 WP_038599186.1 399212..399601(+) (ssbB) [Lactococcus lactis subsp. lactis strain CAB701]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YMDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=856109 QZH48_RS01990 WP_038599186.1 399212..399601(+) (ssbB) [Lactococcus lactis subsp. lactis strain CAB701]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGCGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TACATGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364