Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYM01_RS09435 Genome accession   NZ_CP129527
Coordinates   1983684..1984079 (-) Length   131 a.a.
NCBI ID   WP_012516417.1    Uniprot ID   A0A922T5M1
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1978684..1989079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS09415 (QYM01_09415) - 1979466..1980269 (-) 804 WP_012678666.1 ATP-binding cassette domain-containing protein -
  QYM01_RS09420 (QYM01_09420) - 1980278..1981162 (-) 885 WP_206158778.1 ABC transporter permease -
  QYM01_RS09425 (QYM01_09425) - 1981277..1982239 (-) 963 WP_154804304.1 ABC transporter substrate-binding protein -
  QYM01_RS09430 (QYM01_09430) - 1982266..1983231 (-) 966 WP_206158779.1 ABC transporter substrate-binding protein -
  QYM01_RS09435 (QYM01_09435) ssbA 1983684..1984079 (-) 396 WP_012516417.1 single-stranded DNA-binding protein Machinery gene
  QYM01_RS09440 (QYM01_09440) ytpR 1984667..1985293 (-) 627 WP_206158780.1 YtpR family tRNA-binding protein -
  QYM01_RS09445 (QYM01_09445) - 1985308..1985625 (-) 318 WP_012516420.1 thioredoxin family protein -
  QYM01_RS09450 (QYM01_09450) - 1985622..1985906 (-) 285 WP_021321209.1 DUF4651 domain-containing protein -
  QYM01_RS09455 (QYM01_09455) pepA 1986312..1987379 (+) 1068 WP_301899749.1 glutamyl aminopeptidase -
  QYM01_RS09460 (QYM01_09460) proC 1987463..1988236 (+) 774 WP_301899750.1 pyrroline-5-carboxylate reductase -
  QYM01_RS09465 (QYM01_09465) - 1988418..1988855 (-) 438 WP_301899751.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14783.98 Da        Isoelectric Point: 8.9315

>NTDB_id=854020 QYM01_RS09435 WP_012516417.1 1983684..1984079(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=854020 QYM01_RS09435 WP_012516417.1 1983684..1984079(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGCTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGAAGCCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397