Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QYL88_RS06210 Genome accession   NZ_CP129460
Coordinates   1335663..1335986 (+) Length   107 a.a.
NCBI ID   WP_015729165.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain N9-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330663..1340986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL88_RS06180 - 1331339..1331542 (+) 204 WP_014613816.1 YqgQ family protein -
  QYL88_RS06185 - 1331539..1332525 (+) 987 WP_014613817.1 ROK family glucokinase -
  QYL88_RS06190 - 1332526..1332837 (+) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  QYL88_RS06195 - 1332850..1333479 (+) 630 WP_065354202.1 MBL fold metallo-hydrolase -
  QYL88_RS06200 comGA 1333640..1334614 (+) 975 WP_065354203.1 competence type IV pilus ATPase ComGA Machinery gene
  QYL88_RS06205 comGB 1334583..1335650 (+) 1068 WP_014613821.1 competence type IV pilus assembly protein ComGB -
  QYL88_RS06210 comGC 1335663..1335986 (+) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  QYL88_RS06215 comGD 1335964..1336404 (+) 441 WP_014613823.1 competence type IV pilus minor pilin ComGD -
  QYL88_RS06220 - 1336509..1336709 (+) 201 WP_020219623.1 hypothetical protein -
  QYL88_RS06225 - 1336615..1337100 (+) 486 WP_080552896.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QYL88_RS06230 - 1337264..1337791 (+) 528 WP_014613826.1 shikimate kinase -
  QYL88_RS06235 gcvT 1337949..1339040 (+) 1092 WP_065354204.1 glycine cleavage system aminomethyltransferase GcvT -
  QYL88_RS06240 gcvPA 1339053..1340402 (+) 1350 WP_065354205.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12027.26 Da        Isoelectric Point: 9.0966

>NTDB_id=853508 QYL88_RS06210 WP_015729165.1 1335663..1335986(+) (comGC) [Staphylococcus pseudintermedius strain N9-1]
MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEEITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=853508 QYL88_RS06210 WP_015729165.1 1335663..1335986(+) (comGC) [Staphylococcus pseudintermedius strain N9-1]
ATGATTCAACAACTTAAATTAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTACTGTTAATTAT
TAGTGTACTATTGATTCTCATTATCCCGAATATTGCTAAGCAGTCAGATCATATCCAAAAAACGGGTTGTGCTGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGAGATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

73.529

95.327

0.701
  comGC Staphylococcus aureus N315

73.529

95.327

0.701
  comGC/cglC Streptococcus mitis SK321

44.898

91.589

0.411
  comGC/cglC Streptococcus pneumoniae D39

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae TIGR4

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae Rx1

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae R6

43.878

91.589

0.402
  comYC Streptococcus suis isolate S10

53.846

72.897

0.393
  comYC Streptococcus gordonii str. Challis substr. CH1

49.398

77.57

0.383
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comGC/cglC Streptococcus mitis NCTC 12261

48.78

76.636

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

48.78

76.636

0.374