Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QR290_RS25105 Genome accession   NZ_CP128260
Coordinates   5598079..5599296 (+) Length   405 a.a.
NCBI ID   WP_289203824.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5593079..5604296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS25085 (QR290_25085) - 5594609..5594905 (+) 297 WP_289203822.1 DUF2845 domain-containing protein -
  QR290_RS25090 (QR290_25090) - 5595073..5595429 (-) 357 WP_115079239.1 BON domain-containing protein -
  QR290_RS25095 (QR290_25095) pilA/pilAI 5595727..5596149 (-) 423 WP_115079240.1 pilin Machinery gene
  QR290_RS25100 (QR290_25100) pilB 5596376..5598076 (+) 1701 WP_289203823.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QR290_RS25105 (QR290_25105) pilC 5598079..5599296 (+) 1218 WP_289203824.1 type II secretion system F family protein Machinery gene
  QR290_RS25110 (QR290_25110) pilD 5599298..5600170 (+) 873 WP_289203825.1 A24 family peptidase Machinery gene
  QR290_RS25115 (QR290_25115) coaE 5600167..5600790 (+) 624 WP_289203826.1 dephospho-CoA kinase -
  QR290_RS25120 (QR290_25120) yacG 5600787..5600987 (+) 201 WP_011335983.1 DNA gyrase inhibitor YacG -
  QR290_RS25125 (QR290_25125) - 5600994..5601209 (-) 216 WP_007959584.1 hypothetical protein -
  QR290_RS25130 (QR290_25130) - 5601275..5601964 (-) 690 WP_289203827.1 energy-coupling factor ABC transporter permease -
  QR290_RS25135 (QR290_25135) - 5602098..5602724 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  QR290_RS25140 (QR290_25140) - 5602721..5603248 (+) 528 WP_289203828.1 MOSC domain-containing protein -
  QR290_RS25145 (QR290_25145) - 5603300..5603473 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44101.84 Da        Isoelectric Point: 10.1093

>NTDB_id=846925 QR290_RS25105 WP_289203824.1 5598079..5599296(+) (pilC) [Pseudomonas fluorescens strain PH.SM]
MAVKAAKISVYAWEGTDRKGSKVTGELSGLNPALIKAQLRKQGINPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPTAVVLVAAVVTGILLIKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGLLVAGFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=846925 QR290_RS25105 WP_289203824.1 5598079..5599296(+) (pilC) [Pseudomonas fluorescens strain PH.SM]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACCGCAAAGGCAGCAAGGTGACCGGCGAGTT
AAGCGGTCTGAACCCCGCACTGATCAAGGCCCAATTGCGCAAGCAGGGCATCAACCCCGGCAAGGTACGCAAGAAATCCG
CCTCGCTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCCCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAGGTCGCCGCCGGCAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCGCAATATTTCGACGAGCTTTACT
GCAACCTGGTGGATGCCGGCGAGCAGTCCGGCGCCCTCGACACCCTGCTGGAACGGGTTGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCCACGGCCGTAGTGCTGGTGGCGGCGGTGGTCACCGGGAT
TCTGCTGATCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCCGGCTTCGGTGCCGAACTGCCGGCCTTCACGTTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGTTTGCTGGTAGCCGGTTTCTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCTTGCGCGACCGGCGCGATGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACACTGAT
GTACAAGTCCGCCGTGGCACGGTTTGCCCGGACCCTGTCGACCACCTTCGCAGCCGGCGTGCCGTTGGTGGAAGCGCTGG
ACTCGGTGGCCGGGGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGCTGCGCATCCGCCAGGACGTTTCCACCGGCATG
CAGCTGAATTTCTCGATGCGCTCCACCGGCATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAGGAGTCCGG
CGCACTGGACGAGATGCTCGATAAAGTCGCAGGTTTCTATGAGGACGAGGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTGATCGTCGGCGGTCTGGTGGTGGCGATGTATCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.061

100

0.758
  pilC Acinetobacter baylyi ADP1

58.824

100

0.593
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilG Neisseria meningitidis 44/76-A

42.963

100

0.43
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilC Vibrio campbellii strain DS40M4

40.976

100

0.415
  pilC Thermus thermophilus HB27

39.152

99.012

0.388