Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QRD90_RS25910 Genome accession   NZ_CP128118
Coordinates   5297811..5298173 (-) Length   120 a.a.
NCBI ID   WP_054398623.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LN4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5292811..5303173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS25895 (QRD90_25875) - 5293756..5295372 (-) 1617 WP_053536872.1 ABC transporter substrate-binding protein -
  QRD90_RS25900 (QRD90_25880) - 5295415..5296383 (-) 969 WP_127777640.1 dipeptide ABC transporter ATP-binding protein -
  QRD90_RS25905 (QRD90_25885) - 5296364..5297368 (-) 1005 WP_252296940.1 ABC transporter ATP-binding protein -
  QRD90_RS25910 (QRD90_25890) ssbB 5297811..5298173 (-) 363 WP_054398623.1 single-stranded DNA-binding protein Machinery gene
  QRD90_RS25915 (QRD90_25895) - 5298533..5298967 (+) 435 WP_053536876.1 YwpF family protein -
  QRD90_RS25920 (QRD90_25900) - 5299081..5299374 (-) 294 WP_053536877.1 hypothetical protein -
  QRD90_RS25925 (QRD90_25905) fabZ 5299664..5300092 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QRD90_RS25930 (QRD90_25910) - 5300221..5300475 (-) 255 WP_053536878.1 DNA-directed RNA polymerase subunit beta -
  QRD90_RS27145 - 5300644..5301084 (-) 441 WP_350063118.1 flagellar basal body rod C-terminal domain-containing protein -
  QRD90_RS27150 - 5301353..5301487 (-) 135 WP_350063119.1 flagellar basal body protein -
  QRD90_RS25940 (QRD90_25920) - 5301536..5302183 (-) 648 WP_350063157.1 flagellar hook-basal body protein -
  QRD90_RS27155 - 5302258..5302374 (-) 117 WP_319023475.1 flagellar basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13684.62 Da        Isoelectric Point: 9.6262

>NTDB_id=846122 QRD90_RS25910 WP_054398623.1 5297811..5298173(-) (ssbB) [Peribacillus frigoritolerans strain LN4]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGTKQNDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=846122 QRD90_RS25910 WP_054398623.1 5297811..5298173(-) (ssbB) [Peribacillus frigoritolerans strain LN4]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCTGATGGCAAGGCTGTTTC
CAATATCACATTAGCGGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATCGGAACAAAACA
AAATGATGTTAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

88.333

0.492
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.34

88.333

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367