Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QSG87_RS01695 Genome accession   NZ_CP127923
Coordinates   321991..323217 (-) Length   408 a.a.
NCBI ID   WP_317023906.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316991..328217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS01670 (QSG87_01670) - 318362..318685 (+) 324 WP_087512620.1 pyrimidine/purine nucleoside phosphorylase -
  QSG87_RS01675 (QSG87_01675) rlmB 318817..319566 (+) 750 WP_317023903.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QSG87_RS01680 (QSG87_01680) - 319601..320515 (+) 915 WP_317023904.1 DMT family transporter -
  QSG87_RS01685 (QSG87_01685) coaE 320517..321116 (-) 600 WP_317023905.1 dephospho-CoA kinase -
  QSG87_RS01690 (QSG87_01690) pilD 321131..321991 (-) 861 WP_087550409.1 A24 family peptidase Machinery gene
  QSG87_RS01695 (QSG87_01695) pilC 321991..323217 (-) 1227 WP_317023906.1 type II secretion system F family protein Machinery gene
  QSG87_RS01700 (QSG87_01700) pilB 323246..324958 (-) 1713 WP_317023907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSG87_RS01705 (QSG87_01705) tpiA 325244..326035 (+) 792 WP_317023908.1 triose-phosphate isomerase -
  QSG87_RS01710 (QSG87_01710) secG 326049..326381 (+) 333 WP_317023909.1 preprotein translocase subunit SecG -
  QSG87_RS01735 (QSG87_01735) rimP 327176..327700 (+) 525 WP_087550414.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44888.41 Da        Isoelectric Point: 9.8660

>NTDB_id=845235 QSG87_RS01695 WP_317023906.1 321991..323217(-) (pilC) [Acinetobacter chinensis strain SAAc573]
MAVKKAQMMPNFIYEGVDRKGAKIKGEMPARNMALAKVTLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPASVVVVAIIVTIILMVKVVPVFQELFSSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGAVIA
AFMEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIRDDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=845235 QSG87_RS01695 WP_317023906.1 321991..323217(-) (pilC) [Acinetobacter chinensis strain SAAc573]
ATGGCTGTCAAAAAAGCACAGATGATGCCAAACTTCATCTACGAAGGGGTTGATCGTAAAGGGGCTAAGATCAAAGGGGA
AATGCCGGCACGAAACATGGCTTTAGCCAAAGTGACGCTGCGCAAGCAAGGGATCACCATCAAAACCATCCGGGAAAAGA
AAAAAAATATTCTCGAAGGGCTGATGAAGAAAAAAGTATCCACGCTTGATATCACCATCTTCACCCGTCAGCTTGCAACC
ATGATGAAAGCCGGTGTACCTTTGGTACAAAGCTTTGAAATTGTTGCAGAAGGTCTTGAAAACCCTGCCATGCGTGAAGT
TGTTCTTGGCATTAAAGGTGAAGTCGAAGGTGGTAATACTTTTGCAGGTGCCCTGAAAAAATATCCACAGTATTTTGACA
ACCTGTTCTGTTCACTGGTCGAATCAGGGGAACAGTCTGGTGCTCTTGAAACCATGCTGGACCGTGTTGCAATCTATAAA
GAAAAAAGCGAACTGCTTAAACAGAAAATTAAAAAGGCTATGAAGTATCCAGCCAGTGTAGTTGTGGTCGCTATTATTGT
AACAATTATTCTGATGGTTAAAGTCGTGCCTGTTTTCCAGGAGTTGTTCTCCTCATTTGGTGCAGATCTGCCGGCATTTA
CTAAAATGGTAGTGAATATGTCTGAGTGGATGCAGAAATACTGGTTCATTCTGATTATTGCCATTGGTGCTGTCATTGCA
GCTTTCATGGAAGCCAAAAAACGTAGTAAAAAATTCCGCGATTTCCTGGACAAAGCAGCACTGAAAGCACCTATTTTCGG
TGACCTGGTGTATAAAGCTATTATTGCCCGTTACAGTCGTACTCTTGCGACCACTTTCGCGGCTGGTGTACCGTTAATTG
AAGCACTCGAATCTACAGCAGGTGCAACCAATAACGTGGTTTATGAACAGGCCGTCATGAAAATCAGGGATGATGTCGCA
ACAGGACAACAGCTCCAGTTTGCCATGCGGGTTACGGATAAATTCCCATCCATGGCAGTACAGATGGTTGCAATTGGCGA
AGAATCCGGTGCACTGGATGCCATGCTGGATAAAGTGGCTACACACTATGAAAATGAAGTGGATAATGCCGTGGATGGAT
TGACCTCCATGATGGAACCTTTGATCATGGCTGTACTGGGTGTACTGGTCGGTGGTCTGGTTATCGCAATGTATCTACCA
ATCTTCCAGATGGGCTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.706

100

0.897
  pilC Acinetobacter baylyi ADP1

83.333

100

0.833
  pilC Pseudomonas stutzeri DSM 10701

61.713

97.304

0.6
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

43.382

100

0.434
  pilC Vibrio campbellii strain DS40M4

40.943

98.775

0.404
  pilC Thermus thermophilus HB27

36.658

98.284

0.36