NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QSG87_RS01690	Genome accession	NZ_CP127923
Coordinates	321131..321991 (-)	Length	286 a.a.
NCBI ID	WP_087550409.1	Uniprot ID	-
Organism	Acinetobacter chinensis strain SAAc573
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 316131..326991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSG87_RS01665 (QSG87_01665)	-	316982..318280 (+)	1299	WP_317023902.1	tetratricopeptide repeat protein	-
QSG87_RS01670 (QSG87_01670)	-	318362..318685 (+)	324	WP_087512620.1	pyrimidine/purine nucleoside phosphorylase	-
QSG87_RS01675 (QSG87_01675)	rlmB	318817..319566 (+)	750	WP_317023903.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QSG87_RS01680 (QSG87_01680)	-	319601..320515 (+)	915	WP_317023904.1	DMT family transporter	-
QSG87_RS01685 (QSG87_01685)	coaE	320517..321116 (-)	600	WP_317023905.1	dephospho-CoA kinase	-
QSG87_RS01690 (QSG87_01690)	pilD	321131..321991 (-)	861	WP_087550409.1	A24 family peptidase	Machinery gene
QSG87_RS01695 (QSG87_01695)	pilC	321991..323217 (-)	1227	WP_317023906.1	type II secretion system F family protein	Machinery gene
QSG87_RS01700 (QSG87_01700)	pilB	323246..324958 (-)	1713	WP_317023907.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QSG87_RS01705 (QSG87_01705)	tpiA	325244..326035 (+)	792	WP_317023908.1	triose-phosphate isomerase	-
QSG87_RS01710 (QSG87_01710)	secG	326049..326381 (+)	333	WP_317023909.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31740.76 Da Isoelectric Point: 7.4687

                                >NTDB_id=845234 QSG87_RS01690 WP_087550409.1 321131..321991(-) (pilD) [Acinetobacter chinensis strain SAAc573]

MQEIISYLSTTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQEWRQECQLYLHPDHPPEPETPITLSKPASTCPKCQSE

IRWYQNIPVVSWLALRGKCGNCSNPISIRYPFIELLTAACSLTVVAVFGPSIQMLAGLLLTWVLIALTFIDFDTQLLPDR

YTLPLAAIGLAVNSYSVFTSPAASIWGYIIGFLCLWVVYYLFKVVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSV

VGAVIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=845234 QSG87_RS01690 WP_087550409.1 321131..321991(-) (pilD) [Acinetobacter chinensis strain SAAc573]

ATGCAGGAAATTATCTCTTATTTAAGTACAACCCCAACTGCACTTTATCTGGCAGTTGGGATTTTCAGTTTATGTATCGG

CAGTTTTCTGAATGTCGTTATTTATCGCACCCCGAAAATGATGGAACAGGAATGGCGACAGGAATGTCAGCTGTACCTGC

ATCCAGATCACCCACCTGAACCTGAAACTCCAATAACGCTGAGCAAACCCGCATCGACCTGCCCCAAGTGTCAGTCAGAA

ATCCGCTGGTATCAGAATATTCCTGTTGTCAGCTGGCTGGCATTACGTGGCAAATGTGGTAACTGCTCCAATCCAATCAG

TATCCGCTATCCTTTTATTGAACTGCTGACGGCGGCCTGTTCCCTGACTGTCGTTGCGGTATTTGGTCCATCCATTCAGA

TGCTTGCAGGACTGCTACTGACCTGGGTATTGATTGCATTAACCTTCATAGATTTTGACACACAGTTACTGCCTGACCGT

TATACCCTGCCACTTGCAGCGATTGGCCTTGCGGTAAACAGCTATTCAGTATTCACATCCCCTGCTGCATCCATATGGGG

ATATATCATTGGCTTCCTTTGCCTCTGGGTCGTCTATTATCTGTTTAAAGTTGTGACCGGCAAAGAAGGCATGGGTTATG

GCGACTTTAAACTGCTGGCTGCCCTGGGTGCCTGGATGGGTCCTTTGCTCCTGCCTTTGATTGTGTTACTTTCATCTGTG

GTCGGTGCGGTAATTGGTATTATTTTACTGAAAATCCGTAAAGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCCAT

CGCTGGCTGGATTGCCTTTTTATGGGGTGAACAGATCATGAAAATTTATCTTGGGCAGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	76.491	99.65	0.762
pilD	Acinetobacter nosocomialis M2	75.789	99.65	0.755
pilD	Vibrio campbellii strain DS40M4	55.926	94.406	0.528
pilD	Vibrio cholerae strain A1552	55.597	93.706	0.521
pilD	Neisseria gonorrhoeae MS11	45.756	94.755	0.434

Detailed information NTG0845234