Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6410_RS10130 Genome accession   NZ_AP024276
Coordinates   2023970..2024365 (-) Length   131 a.a.
NCBI ID   WP_172040749.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2018970..2029365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS10110 (SUT286_19780) rpsG 2020284..2020754 (-) 471 WP_002940031.1 30S ribosomal protein S7 -
  L6410_RS10115 (SUT286_19790) rpsL 2020771..2021184 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  L6410_RS10120 (SUT286_19800) groL 2021414..2023036 (-) 1623 WP_237395445.1 chaperonin GroEL -
  L6410_RS10125 (SUT286_19810) groES 2023128..2023409 (-) 282 WP_237395446.1 co-chaperone GroES -
  L6410_RS10130 (SUT286_19820) ssbA 2023970..2024365 (-) 396 WP_172040749.1 single-stranded DNA-binding protein Machinery gene
  L6410_RS10135 (SUT286_19830) - 2024444..2025376 (+) 933 WP_172089535.1 alpha/beta fold hydrolase -
  L6410_RS10140 (SUT286_19840) ytpR 2025445..2026068 (-) 624 WP_172040745.1 YtpR family tRNA-binding protein -
  L6410_RS10145 (SUT286_19850) - 2026087..2027043 (-) 957 WP_237395447.1 DUF1002 domain-containing protein -
  L6410_RS10150 (SUT286_19860) - 2027088..2027408 (-) 321 WP_024375735.1 thioredoxin family protein -
  L6410_RS10155 (SUT286_19870) - 2027405..2027689 (-) 285 WP_002936537.1 DUF4651 domain-containing protein -
  L6410_RS10160 (SUT286_19880) pepA 2027902..2028963 (+) 1062 WP_024393516.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14920.81 Da        Isoelectric Point: 5.0026

>NTDB_id=84495 L6410_RS10130 WP_172040749.1 2023970..2024365(-) (ssbA) [Streptococcus parasuis strain SUT-286]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNIIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNANDDLADVILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=84495 L6410_RS10130 WP_172040749.1 2023970..2024365(-) (ssbA) [Streptococcus parasuis strain SUT-286]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCAGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTAACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATATTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTTTCTTATGGCAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGTAGCAACCACTATGTGACAGAGATTCTAGGTCAATCATTCCAATTGCTTGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATGCGAATGATGATTTGGCGGATGTGATTTTGGAAGAAGAAGAATTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

65.179

85.496

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment