Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DBT50_RS03810 | Genome accession | NZ_CP127382 |
| Coordinates | 793140..793547 (+) | Length | 135 a.a. |
| NCBI ID | WP_111853310.1 | Uniprot ID | - |
| Organism | Aerococcus tenax strain UMB3669 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 788140..798547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBT50_RS03770 (DBT50_002805) | - | 788169..788462 (+) | 294 | WP_111853303.1 | hypothetical protein | - |
| DBT50_RS03775 (DBT50_002810) | - | 788455..789405 (+) | 951 | WP_111853304.1 | YqaJ viral recombinase family protein | - |
| DBT50_RS03780 (DBT50_002815) | - | 789395..790291 (+) | 897 | WP_111853305.1 | recombinase RecT | - |
| DBT50_RS03785 (DBT50_002820) | - | 790301..791161 (+) | 861 | WP_111853306.1 | phage replisome organizer N-terminal domain-containing protein | - |
| DBT50_RS03790 (DBT50_002825) | - | 791164..791973 (+) | 810 | WP_111853307.1 | ATP-binding protein | - |
| DBT50_RS03795 (DBT50_002830) | - | 792024..792284 (+) | 261 | WP_181566098.1 | hypothetical protein | - |
| DBT50_RS03800 (DBT50_002835) | - | 792244..792714 (+) | 471 | WP_181566099.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DBT50_RS03805 (DBT50_002840) | - | 792707..793150 (+) | 444 | WP_111853309.1 | hypothetical protein | - |
| DBT50_RS03810 (DBT50_002845) | ssb | 793140..793547 (+) | 408 | WP_111853310.1 | single-stranded DNA-binding protein | Machinery gene |
| DBT50_RS03815 (DBT50_002850) | - | 793564..793833 (+) | 270 | WP_111853311.1 | hypothetical protein | - |
| DBT50_RS03820 (DBT50_002855) | - | 793826..794203 (+) | 378 | WP_111853312.1 | hypothetical protein | - |
| DBT50_RS03825 (DBT50_002860) | dut | 794208..794672 (+) | 465 | WP_111853313.1 | dUTP diphosphatase | - |
| DBT50_RS03830 (DBT50_002865) | - | 794743..795033 (+) | 291 | WP_111853314.1 | hypothetical protein | - |
| DBT50_RS03835 (DBT50_002870) | - | 795017..795286 (+) | 270 | WP_318602873.1 | hypothetical protein | - |
| DBT50_RS03840 (DBT50_002875) | - | 795267..795506 (+) | 240 | WP_111853316.1 | DUF3310 domain-containing protein | - |
| DBT50_RS03845 (DBT50_002880) | - | 795583..796023 (+) | 441 | WP_111853317.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| DBT50_RS03850 (DBT50_002885) | - | 796170..796514 (+) | 345 | WP_111853318.1 | HNH endonuclease signature motif containing protein | - |
| DBT50_RS03855 (DBT50_002890) | - | 796610..797923 (+) | 1314 | WP_111853319.1 | phage portal protein | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 15229.99 Da Isoelectric Point: 6.9230
>NTDB_id=843883 DBT50_RS03810 WP_111853310.1 793140..793547(+) (ssb) [Aerococcus tenax strain UMB3669]
MINNVVLVGYMSRDPELKHTQSGKAFTYFTVACNRPKTQDGQQQADFINCVAWNKNAENLCQYLGKGSKVGVEGRIQTRS
YENQQGQKVYVTEVLANRITFLDSREASQRQMPQPANTNAAPYQGFDISDDEIPF
MINNVVLVGYMSRDPELKHTQSGKAFTYFTVACNRPKTQDGQQQADFINCVAWNKNAENLCQYLGKGSKVGVEGRIQTRS
YENQQGQKVYVTEVLANRITFLDSREASQRQMPQPANTNAAPYQGFDISDDEIPF
Nucleotide
Download Length: 408 bp
>NTDB_id=843883 DBT50_RS03810 WP_111853310.1 793140..793547(+) (ssb) [Aerococcus tenax strain UMB3669]
ATGATAAATAATGTTGTATTGGTGGGCTACATGTCTAGAGACCCAGAATTAAAGCATACCCAAAGTGGTAAAGCTTTTAC
TTATTTCACAGTGGCTTGTAACCGGCCAAAGACTCAAGATGGCCAACAGCAAGCAGACTTTATAAATTGTGTAGCTTGGA
ATAAAAATGCTGAAAATCTATGCCAATATTTGGGCAAGGGCTCAAAAGTAGGTGTTGAGGGAAGAATACAGACCAGAAGT
TATGAAAACCAGCAAGGCCAAAAAGTTTATGTGACCGAAGTGCTGGCCAATAGAATTACTTTCTTAGACTCAAGGGAAGC
TAGTCAAAGGCAAATGCCACAGCCGGCAAATACCAATGCAGCGCCATACCAAGGCTTTGATATTTCAGATGATGAAATTC
CATTCTAG
ATGATAAATAATGTTGTATTGGTGGGCTACATGTCTAGAGACCCAGAATTAAAGCATACCCAAAGTGGTAAAGCTTTTAC
TTATTTCACAGTGGCTTGTAACCGGCCAAAGACTCAAGATGGCCAACAGCAAGCAGACTTTATAAATTGTGTAGCTTGGA
ATAAAAATGCTGAAAATCTATGCCAATATTTGGGCAAGGGCTCAAAAGTAGGTGTTGAGGGAAGAATACAGACCAGAAGT
TATGAAAACCAGCAAGGCCAAAAAGTTTATGTGACCGAAGTGCTGGCCAATAGAATTACTTTCTTAGACTCAAGGGAAGC
TAGTCAAAGGCAAATGCCACAGCCGGCAAATACCAATGCAGCGCCATACCAAGGCTTTGATATTTCAGATGATGAAATTC
CATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
44.706 |
100 |
0.563 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.853 |
100 |
0.452 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
78.519 |
0.437 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
51.887 |
78.519 |
0.407 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
38.971 |
100 |
0.393 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
38.971 |
100 |
0.393 |
| ssbA | Streptococcus mutans UA159 |
38.235 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.235 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.235 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.235 |
100 |
0.385 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.235 |
100 |
0.385 |