Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VMR32_RS00105 Genome accession   NZ_CP142601
Coordinates   22415..23503 (+) Length   362 a.a.
NCBI ID   WP_012613419.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Tongji     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17415..28503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VMR32_RS00085 (VMR32_00085) rsmB 18310..19614 (-) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VMR32_RS00090 (VMR32_00090) fmt 19611..20555 (-) 945 WP_003123763.1 methionyl-tRNA formyltransferase -
  VMR32_RS00095 (VMR32_00095) def 20610..21116 (-) 507 WP_003107059.1 peptide deformylase -
  VMR32_RS00100 (VMR32_00100) tsaP 21255..22280 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  VMR32_RS00105 (VMR32_00105) dprA 22415..23503 (+) 1089 WP_012613419.1 DNA-processing protein DprA Machinery gene
  VMR32_RS00110 (VMR32_00110) - 23544..24101 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  VMR32_RS00115 (VMR32_00115) - 24111..25088 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  VMR32_RS00120 (VMR32_00120) hemF 25279..26196 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  VMR32_RS00125 (VMR32_00125) aroE 26254..27078 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  VMR32_RS00130 (VMR32_00130) - 27189..28175 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37664.16 Da        Isoelectric Point: 7.0288

>NTDB_id=841438 VMR32_RS00105 WP_012613419.1 22415..23503(+) (dprA) [Pseudomonas aeruginosa strain Tongji]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RQLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=841438 VMR32_RS00105 WP_012613419.1 22415..23503(+) (dprA) [Pseudomonas aeruginosa strain Tongji]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCAGCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

38.736

100

0.39
  dprA Acinetobacter baumannii strain A118

39.093

97.514

0.381
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37