Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QPK06_RS11880 Genome accession   NZ_CP126578
Coordinates   2495105..2496346 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain AV066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2490105..2501346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK06_RS11855 (QPK06_11855) mutT 2492097..2492501 (+) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  QPK06_RS11860 (QPK06_11860) yacG 2492579..2492773 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QPK06_RS11865 (QPK06_11865) zapD 2492783..2493505 (-) 723 WP_005336141.1 cell division protein ZapD -
  QPK06_RS11870 (QPK06_11870) coaE 2493543..2494157 (-) 615 WP_124928361.1 dephospho-CoA kinase -
  QPK06_RS11875 (QPK06_11875) pilD 2494171..2495043 (-) 873 WP_124928362.1 A24 family peptidase Machinery gene
  QPK06_RS11880 (QPK06_11880) pilC 2495105..2496346 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QPK06_RS11885 (QPK06_11885) pilB 2496585..2498291 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QPK06_RS11890 (QPK06_11890) - 2498294..2498755 (-) 462 WP_139742528.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QPK06_RS11895 (QPK06_11895) nadC 2499071..2499934 (-) 864 WP_043821973.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QPK06_RS11900 (QPK06_11900) - 2499938..2500408 (-) 471 WP_040068932.1 retropepsin-like aspartic protease -
  QPK06_RS11905 (QPK06_11905) ampD 2500539..2501114 (+) 576 WP_139742527.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=838928 QPK06_RS11880 WP_005336136.1 2495105..2496346(-) (pilC) [Aeromonas veronii strain AV066]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=838928 QPK06_RS11880 WP_005336136.1 2495105..2496346(-) (pilC) [Aeromonas veronii strain AV066]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGATAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGAACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGGGCACTGGAGACCATCTATGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGCATCTTCCTCTATGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTTGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAAGCGGCGATGGCCCGCTTTGCCCGTACTCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCACTCATCTCGGCGGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCTGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTGGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368