Detailed information NTG0838927

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QPK06_RS11875
• Genome accession: NZ_CP126578
• Coordinates: 2494171..2495043 (-)
• Length: 290 a.a.
• NCBI ID: WP_124928362.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain AV066
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2489171..2500043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPK06_RS11850 (QPK06_11850)	secA	2489192..2491912 (+)	2721	WP_005336144.1	preprotein translocase subunit SecA	-
QPK06_RS11855 (QPK06_11855)	mutT	2492097..2492501 (+)	405	WP_042053534.1	8-oxo-dGTP diphosphatase MutT	-
QPK06_RS11860 (QPK06_11860)	yacG	2492579..2492773 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
QPK06_RS11865 (QPK06_11865)	zapD	2492783..2493505 (-)	723	WP_005336141.1	cell division protein ZapD	-
QPK06_RS11870 (QPK06_11870)	coaE	2493543..2494157 (-)	615	WP_124928361.1	dephospho-CoA kinase	-
QPK06_RS11875 (QPK06_11875)	pilD	2494171..2495043 (-)	873	WP_124928362.1	A24 family peptidase	Machinery gene
QPK06_RS11880 (QPK06_11880)	pilC	2495105..2496346 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
QPK06_RS11885 (QPK06_11885)	pilB	2496585..2498291 (-)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
QPK06_RS11890 (QPK06_11890)	-	2498294..2498755 (-)	462	WP_139742528.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QPK06_RS11895 (QPK06_11895)	nadC	2499071..2499934 (-)	864	WP_043821973.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32139.42 Da
• Isoelectric Point: 6.5960

>NTDB_id=838927 QPK06_RS11875 WP_124928362.1 2494171..2495043(-) (pilD) [Aeromonas veronii strain AV066]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPHSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAMIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=838927 QPK06_RS11875 WP_124928362.1 2494171..2495043(-) (pilD) [Aeromonas veronii strain AV066]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTCAACGTAGTGATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTTCCGCACTCCGCATGTCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTATCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGTA
CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCAGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGAATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCATGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452