Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ALDI51_RS05220 Genome accession   NZ_AP024172
Coordinates   1111597..1112814 (-) Length   405 a.a.
NCBI ID   WP_201397469.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain I51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106597..1117814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALDI51_RS05190 (ALDI51_10330) - 1107686..1108558 (+) 873 WP_094434735.1 ATP-binding protein -
  ALDI51_RS05195 (ALDI51_10340) - 1108555..1108980 (+) 426 WP_201397465.1 NUDIX domain-containing protein -
  ALDI51_RS05200 (ALDI51_10350) - 1109043..1109249 (-) 207 WP_201397466.1 DNA gyrase inhibitor YacG -
  ALDI51_RS05205 (ALDI51_10360) zapD 1109251..1110006 (-) 756 WP_094436935.1 cell division protein ZapD -
  ALDI51_RS05210 (ALDI51_10370) coaE 1110084..1110719 (-) 636 WP_201397467.1 dephospho-CoA kinase -
  ALDI51_RS05215 (ALDI51_10380) pilD 1110722..1111597 (-) 876 WP_201397468.1 prepilin peptidase Machinery gene
  ALDI51_RS05220 (ALDI51_10390) pilC 1111597..1112814 (-) 1218 WP_201397469.1 type II secretion system F family protein Machinery gene
  ALDI51_RS05225 (ALDI51_10400) pilB 1112836..1114575 (-) 1740 WP_094434747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ALDI51_RS05235 (ALDI51_10410) - 1114931..1115914 (-) 984 WP_011804284.1 polyprenyl synthetase family protein -
  ALDI51_RS05240 (ALDI51_10420) rplU 1116087..1116398 (+) 312 WP_011804285.1 50S ribosomal protein L21 -
  ALDI51_RS05245 (ALDI51_10430) rpmA 1116414..1116671 (+) 258 WP_011804286.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44355.15 Da        Isoelectric Point: 9.1940

>NTDB_id=83823 ALDI51_RS05220 WP_201397469.1 1111597..1112814(-) (pilC) [Alicycliphilus denitrificans strain I51]
MATIASRDIKDFVFEWEGKDRSGKVVRGEVRASGENQVKATLRRQGVLPTKIKKRRTSGGKKIKPKDIALFTRQMATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIRSALMYPISVLVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEFFVAYWWLIFGAIGGCFYFFM
QAWKRSEKMQRTMDRFLLKMPIFGALIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAVATDRIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=83823 ALDI51_RS05220 WP_201397469.1 1111597..1112814(-) (pilC) [Alicycliphilus denitrificans strain I51]
ATGGCGACCATCGCATCAAGGGACATCAAGGACTTCGTCTTTGAGTGGGAGGGCAAGGACCGCAGCGGCAAGGTCGTGCG
TGGCGAGGTCCGGGCCTCCGGCGAGAACCAGGTCAAGGCGACCCTGCGCCGCCAGGGCGTCCTGCCCACCAAGATCAAGA
AGCGCCGGACGAGCGGGGGCAAGAAGATCAAGCCCAAGGACATCGCCCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCGTGGGGCGCGGCAACACCAACGCCAGCGTGACCAAGCTGCTCAACGA
CATCCGCGCCGACGTGGAGACCGGCACCTCGCTCAATGCCGCGTTCCGCAAATATCCCATGTACTTCGACAGCCTGTACT
GCAACCTGGTGGAGGCAGGCGAGGCGGCCGGTATCCTGGAGGCGCTGCTGGACCGCCTGGCCACCTACATGGAGAAGACC
GAAGCCATCAAATCCAAGATCCGCTCCGCCCTGATGTACCCGATTTCGGTGCTCGTCGTCGCATTCGTCGTGGTCACCGT
GATCATGATCTTCGTGATCCCCGCGTTCAAGGAAGTGTTCACCTCCTTCGGCGCCGACCTGCCCGCGCCCACGTTGCTCG
TGATGGCGATCAGCGAATTCTTCGTCGCCTACTGGTGGCTGATCTTCGGCGCCATCGGGGGGTGCTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAGAAGATGCAGCGCACCATGGACCGCTTCCTGCTGAAGATGCCCATCTTCGGCGCACTGAT
CGAGAAGTCCTGCGTGGCGCGCTGGACGCGCACCCTGTCGACCATGTTCGCCGCCGGCGTGCCGCTGGTGGAGGCGCTCG
ACTCCGTGGGCGGCGCCTCGGGCAATTCGGTCTATGCCGTGGCCACCGACAGGATCCAGCAGGAGGTCTCCACCGGCACC
AGCCTGACGGCGGCGATGGGCAATGCCAATGTGTTTCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAGTCGGG
CTCCATCGACCACATGCTGGGCAAGGCGGCCGACTTCTACGAGGCCGAGGTCGACGAGATGGTGGCCGGCCTGTCCAGCC
TCATGGAGCCCATCATCATCGTGTTCCTGGGCACCCTCATCGGCGGCATCGTGGTGTCCATGTACCTGCCCATCTTCAAG
CTGGGGCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.568

100

0.546
  pilG Neisseria gonorrhoeae MS11

53.03

97.778

0.519
  pilG Neisseria meningitidis 44/76-A

52.778

97.778

0.516
  pilC Legionella pneumophila strain ERS1305867

50.758

97.778

0.496
  pilC Acinetobacter baylyi ADP1

49.497

98.272

0.486
  pilC Acinetobacter baumannii D1279779

48.866

98.025

0.479
  pilC Vibrio campbellii strain DS40M4

39.855

100

0.407
  pilC Vibrio cholerae strain A1552

40.657

97.778

0.398
  pilC Thermus thermophilus HB27

36.973

99.506

0.368

Multiple sequence alignment