Detailed information NTG0083822

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ALDI51_RS05215
• Genome accession: NZ_AP024172
• Coordinates: 1110722..1111597 (-)
• Length: 291 a.a.
• NCBI ID: WP_201397468.1
• Uniprot ID: -
• Organism: Alicycliphilus denitrificans strain I51
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1105722..1116597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ALDI51_RS05185 (ALDI51_10320)	argJ	1106412..1107641 (+)	1230	WP_201397464.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
ALDI51_RS05190 (ALDI51_10330)	-	1107686..1108558 (+)	873	WP_094434735.1	ATP-binding protein	-
ALDI51_RS05195 (ALDI51_10340)	-	1108555..1108980 (+)	426	WP_201397465.1	NUDIX domain-containing protein	-
ALDI51_RS05200 (ALDI51_10350)	-	1109043..1109249 (-)	207	WP_201397466.1	DNA gyrase inhibitor YacG	-
ALDI51_RS05205 (ALDI51_10360)	zapD	1109251..1110006 (-)	756	WP_094436935.1	cell division protein ZapD	-
ALDI51_RS05210 (ALDI51_10370)	coaE	1110084..1110719 (-)	636	WP_201397467.1	dephospho-CoA kinase	-
ALDI51_RS05215 (ALDI51_10380)	pilD	1110722..1111597 (-)	876	WP_201397468.1	prepilin peptidase	Machinery gene
ALDI51_RS05220 (ALDI51_10390)	pilC	1111597..1112814 (-)	1218	WP_201397469.1	type II secretion system F family protein	Machinery gene
ALDI51_RS05225 (ALDI51_10400)	pilB	1112836..1114575 (-)	1740	WP_094434747.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ALDI51_RS05235 (ALDI51_10410)	-	1114931..1115914 (-)	984	WP_011804284.1	polyprenyl synthetase family protein	-
ALDI51_RS05240 (ALDI51_10420)	rplU	1116087..1116398 (+)	312	WP_011804285.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31199.82 Da
• Isoelectric Point: 8.0793

>NTDB_id=83822 ALDI51_RS05215 WP_201397468.1 1110722..1111597(-) (pilD) [Alicycliphilus denitrificans strain I51]
MTGSAFADAVLVGVLGLLIGSFLNVVIHRLPRMMERQWAAECAQYAQDAGLPAQGGAAPAEPFNLLTPRSRCPSCGHEVR
WYENIPVLSYLALRGRCSGCGTRIGVRYPLVELATAALFHACALRWGWSFTTLAWCGFCAALVALALIDWDTTLLPDDIT
LPLLWAGLLASVLRWIDVQPVDAVIGAAAGYVSLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIVLMASVI
GALVGIAMKFASSLREGKYVPFGPFLAGGGLAAMLWGPARIMRAIFSTLGL

Nucleotide

• Length: 876 bp

>NTDB_id=83822 ALDI51_RS05215 WP_201397468.1 1110722..1111597(-) (pilD) [Alicycliphilus denitrificans strain I51]
ATGACGGGTTCCGCCTTTGCGGATGCCGTGCTCGTCGGCGTCCTGGGCCTGCTGATCGGCAGCTTTCTGAACGTGGTGAT
CCACCGCCTGCCGCGCATGATGGAGCGGCAGTGGGCCGCGGAATGCGCGCAGTACGCCCAGGATGCGGGCCTGCCGGCAC
AGGGCGGCGCCGCGCCGGCCGAGCCCTTCAACCTGCTGACGCCACGCTCGCGCTGCCCTTCCTGCGGGCACGAGGTGCGC
TGGTACGAGAACATCCCCGTGCTCAGCTACCTCGCCCTGCGCGGCCGCTGCTCGGGCTGCGGCACGCGCATCGGCGTGCG
CTACCCGCTGGTCGAGCTGGCCACCGCCGCCCTGTTCCATGCCTGCGCCCTGCGCTGGGGCTGGTCTTTCACGACGCTGG
CCTGGTGCGGCTTTTGCGCGGCCCTGGTGGCGCTGGCCCTGATCGACTGGGACACGACCCTGCTGCCCGACGACATCACC
CTGCCCCTGCTGTGGGCCGGGCTGCTGGCCTCCGTGCTGCGCTGGATAGACGTGCAGCCGGTGGACGCGGTGATCGGCGC
GGCCGCGGGCTACGTATCGCTGTGGCTCGTCTACTGGGGCTTCAAGCTCGCCACGGGCAAGGAGGGCATGGGCTATGGCG
ACTTCAAGCTGTTCGCGGCCCTGGGCGCGTGGTTCGGCTGGCAGGCCCTGGTGCCCATCGTCCTCATGGCGTCGGTCATC
GGCGCCCTCGTCGGCATCGCCATGAAGTTCGCCAGCAGCCTGCGCGAGGGCAAGTACGTGCCCTTCGGCCCGTTCCTGGC
GGGAGGCGGGCTGGCCGCCATGCTGTGGGGGCCGGCGCGCATCATGCGGGCCATTTTCTCCACCCTGGGGCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	97.595	0.488
pilD	Vibrio campbellii strain DS40M4	46.263	96.564	0.447
pilD	Neisseria gonorrhoeae MS11	47.126	89.691	0.423
pilD	Acinetobacter nosocomialis M2	43.382	93.471	0.405
pilD	Acinetobacter baumannii D1279779	43.382	93.471	0.405