Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QN096_RS05655 Genome accession   NZ_CP126342
Coordinates   1197615..1198832 (-) Length   405 a.a.
NCBI ID   WP_284547963.1    Uniprot ID   -
Organism   Pseudomonas otitidis strain TL17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192615..1203832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN096_RS05610 (QN096_05610) - 1193006..1193179 (-) 174 WP_044406847.1 DUF3094 family protein -
  QN096_RS05615 (QN096_05615) - 1193259..1193885 (-) 627 WP_044406964.1 DUF1780 domain-containing protein -
  QN096_RS05620 (QN096_05620) - 1194005..1194430 (+) 426 WP_284547960.1 GNAT family N-acetyltransferase -
  QN096_RS05625 (QN096_05625) - 1194427..1194915 (+) 489 WP_284547961.1 FAD/FMN-containing dehydrogenase -
  QN096_RS05630 (QN096_05630) - 1194912..1195598 (+) 687 WP_044406853.1 energy-coupling factor ABC transporter permease -
  QN096_RS05635 (QN096_05635) - 1195710..1195925 (+) 216 WP_160481384.1 hypothetical protein -
  QN096_RS05640 (QN096_05640) yacG 1195938..1196135 (-) 198 WP_142011979.1 DNA gyrase inhibitor YacG -
  QN096_RS05645 (QN096_05645) coaE 1196132..1196743 (-) 612 WP_284547962.1 dephospho-CoA kinase -
  QN096_RS05650 (QN096_05650) pilD 1196740..1197612 (-) 873 WP_074973060.1 A24 family peptidase Machinery gene
  QN096_RS05655 (QN096_05655) pilC 1197615..1198832 (-) 1218 WP_284547963.1 type II secretion system F family protein Machinery gene
  QN096_RS05660 (QN096_05660) pilB 1198839..1200542 (-) 1704 WP_282886667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QN096_RS05665 (QN096_05665) - 1200721..1201197 (-) 477 WP_074973068.1 pilin -
  QN096_RS05670 (QN096_05670) tfpZ 1201473..1202222 (+) 750 WP_284547964.1 TfpX/TfpZ family type IV pilin accessory protein -
  QN096_RS05680 (QN096_05680) nadC 1202434..1203282 (-) 849 WP_284547965.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44155.95 Da        Isoelectric Point: 9.6386

>NTDB_id=837750 QN096_RS05655 WP_284547963.1 1197615..1198832(-) (pilC) [Pseudomonas otitidis strain TL17]
MAEKALKTSTFSWEGTDRKGAKVKGEMGGQSPALVKAQLRKQGINPIKVRKKSVSLFSAGKAIKPADIALFTRQMATMMK
AGVPLLSSFDIIGEGFDNPNMRKMVDELKQEVAAGNSFASSLRKKPIQFDDLYCNLVEAGEQAGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVLVVAIIVSAILLIKVVPQFEDVFKSFGAELPVFTQMVIGMSQVLQEWWLIVLIGVIGASFGIR
EIYRRSENFRNKIDQLLLKIPIVGDIIYKSSVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRKAVNQIKQDVSTGM
QLNFSMRTTGVFPSMALQMTAIGEESGSLDDMLDKVASFYETEVDNMVDNLTALMEPMIMAVLGVVVGGLIVAMYLPIFQ
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=837750 QN096_RS05655 WP_284547963.1 1197615..1198832(-) (pilC) [Pseudomonas otitidis strain TL17]
ATGGCGGAAAAAGCTCTTAAAACCAGCACCTTCAGCTGGGAAGGCACAGACAGGAAAGGTGCCAAAGTCAAAGGTGAGAT
GGGCGGACAGAGCCCAGCGCTGGTTAAAGCCCAACTGCGCAAGCAGGGTATCAACCCAATAAAGGTACGCAAGAAGTCCG
TCTCGTTGTTCAGTGCAGGAAAGGCCATCAAGCCTGCGGACATCGCCCTGTTCACTCGGCAGATGGCGACCATGATGAAG
GCGGGCGTGCCGTTACTCAGCTCTTTCGACATTATTGGCGAAGGGTTCGATAACCCGAACATGCGCAAGATGGTGGACGA
GCTCAAGCAGGAGGTAGCGGCTGGCAACAGCTTCGCTTCCTCTCTGCGGAAAAAGCCAATCCAGTTCGACGACCTCTACT
GCAACCTGGTGGAAGCTGGTGAGCAGGCGGGCGCATTGGAAACCCTGCTGGATCGCGTGGCCACCTACAAGGAAAAAACC
GAGGCACTGAAAGCCAAGATAAAGAAAGCCATGACCTATCCGATTGCGGTACTGGTCGTGGCAATAATTGTTTCCGCCAT
TCTACTGATCAAGGTCGTACCGCAGTTCGAGGATGTCTTCAAAAGCTTTGGGGCGGAGCTACCAGTTTTTACCCAGATGG
TTATTGGCATGTCACAGGTTCTGCAAGAGTGGTGGCTTATCGTCCTGATTGGAGTAATCGGCGCCTCATTCGGCATTCGG
GAGATTTACCGGCGCTCCGAGAACTTTCGTAATAAGATCGACCAGTTGCTGCTCAAGATTCCAATCGTCGGTGACATCAT
TTACAAATCGTCGGTTGCACGTTACGCACGTACCCTGTCCACCACTTTCGCTGCCGGGGTGCCATTGGTCGAAGCACTGG
ATTCAGTCGCTGGTGCTACCGGGAACGTTGTATTCCGTAAAGCGGTAAACCAGATCAAGCAGGATGTGTCGACCGGTATG
CAGCTCAATTTTTCCATGCGTACCACAGGCGTGTTCCCCAGCATGGCACTGCAAATGACAGCTATTGGTGAAGAGTCTGG
TTCTCTCGATGACATGTTGGATAAAGTCGCGAGCTTCTATGAAACCGAGGTCGACAACATGGTCGACAACCTGACCGCAC
TGATGGAACCCATGATCATGGCCGTTCTTGGCGTAGTAGTAGGCGGCCTTATCGTTGCGATGTATCTGCCCATCTTCCAA
CTCGGTCAAGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.494

100

0.805
  pilC Acinetobacter baylyi ADP1

59.214

100

0.595
  pilC Acinetobacter baumannii D1279779

58.519

100

0.585
  pilC Legionella pneumophila strain ERS1305867

51.637

98.025

0.506
  pilG Neisseria gonorrhoeae MS11

45.522

99.259

0.452
  pilG Neisseria meningitidis 44/76-A

45.025

99.259

0.447
  pilC Vibrio cholerae strain A1552

43.704

100

0.437
  pilC Vibrio campbellii strain DS40M4

39.646

97.778

0.388
  pilC Thermus thermophilus HB27

37

98.765

0.365