Detailed information NTG0837749

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QN096_RS05650
• Genome accession: NZ_CP126342
• Coordinates: 1196740..1197612 (-)
• Length: 290 a.a.
• NCBI ID: WP_074973060.1
• Uniprot ID: -
• Organism: Pseudomonas otitidis strain TL17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1191740..1202612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN096_RS05610 (QN096_05610)	-	1193006..1193179 (-)	174	WP_044406847.1	DUF3094 family protein	-
QN096_RS05615 (QN096_05615)	-	1193259..1193885 (-)	627	WP_044406964.1	DUF1780 domain-containing protein	-
QN096_RS05620 (QN096_05620)	-	1194005..1194430 (+)	426	WP_284547960.1	GNAT family N-acetyltransferase	-
QN096_RS05625 (QN096_05625)	-	1194427..1194915 (+)	489	WP_284547961.1	FAD/FMN-containing dehydrogenase	-
QN096_RS05630 (QN096_05630)	-	1194912..1195598 (+)	687	WP_044406853.1	energy-coupling factor ABC transporter permease	-
QN096_RS05635 (QN096_05635)	-	1195710..1195925 (+)	216	WP_160481384.1	hypothetical protein	-
QN096_RS05640 (QN096_05640)	yacG	1195938..1196135 (-)	198	WP_142011979.1	DNA gyrase inhibitor YacG	-
QN096_RS05645 (QN096_05645)	coaE	1196132..1196743 (-)	612	WP_284547962.1	dephospho-CoA kinase	-
QN096_RS05650 (QN096_05650)	pilD	1196740..1197612 (-)	873	WP_074973060.1	A24 family peptidase	Machinery gene
QN096_RS05655 (QN096_05655)	pilC	1197615..1198832 (-)	1218	WP_284547963.1	type II secretion system F family protein	Machinery gene
QN096_RS05660 (QN096_05660)	pilB	1198839..1200542 (-)	1704	WP_282886667.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QN096_RS05665 (QN096_05665)	-	1200721..1201197 (-)	477	WP_074973068.1	pilin	-
QN096_RS05670 (QN096_05670)	tfpZ	1201473..1202222 (+)	750	WP_284547964.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31934.94 Da
• Isoelectric Point: 6.4671

>NTDB_id=837749 QN096_RS05650 WP_074973060.1 1196740..1197612(-) (pilD) [Pseudomonas otitidis strain TL17]
MSFLDFLAGNLPAFVFCVFLLGLLVGSFLNVVIYRLPVMMFRDWKIQAREALELPPEPPGETFNLVLPNSRCPHCQHEIK
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDIDHQLLPDSLV
LPLLWLGLIVNSQGLFTGLEDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=837749 QN096_RS05650 WP_074973060.1 1196740..1197612(-) (pilD) [Pseudomonas otitidis strain TL17]
ATGTCCTTTCTCGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCGTATTCCTCCTCGGCCTCTTGGTCGGCAG
TTTCCTCAATGTGGTCATTTACCGCTTGCCGGTGATGATGTTCCGCGACTGGAAGATCCAGGCCCGCGAGGCCCTGGAGT
TACCGCCGGAGCCGCCGGGCGAGACGTTCAACCTGGTTCTGCCGAACTCCCGCTGCCCCCATTGCCAGCACGAAATCAAG
GCCTGGGAGAACATCCCTGTGGTGAGCTGGCTGGCCCTGGGCGGCAAGTGTTCATCGTGCAAGGCACCGATCAAGAAGCG
CTACCCGCTGGTGGAACTGGCCTGCGGGCTGCTTTCCGCCTACGTCGCCTGGCACTTCGGTTTCACCTGGCAGGCGGGCG
CCTTCCTGGTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGACATCGACCACCAGCTGCTCCCTGATTCCCTAGTG
CTGCCGCTGCTCTGGCTTGGGCTGATCGTCAACAGCCAGGGCCTGTTCACCGGGCTGGAGGATGCCCTCTGGGGCGCGGT
AGGCGGCTACCTGAGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCACTGACCATCCTGCTGTCGTCTCTGGTCGGC
GCGGTACTGGGGATCATCATCCTCAAGCTGCGCGATGCCGACAGCGGCACGCCCATTCCCTTCGGCCCCTACCTGGCGAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.448	98.621	0.517
pilD	Vibrio cholerae strain A1552	55.639	91.724	0.51
pilD	Acinetobacter nosocomialis M2	51.748	98.621	0.51
pilD	Vibrio campbellii strain DS40M4	53.114	94.138	0.5
pilD	Neisseria gonorrhoeae MS11	51.724	90	0.466