Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QN061_RS12845 Genome accession   NZ_CP126305
Coordinates   2752552..2753778 (+) Length   408 a.a.
NCBI ID   WP_143683928.1    Uniprot ID   -
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2747552..2758778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS12820 (QN061_12820) fldB 2748050..2748571 (+) 522 WP_020331982.1 flavodoxin FldB -
  QN061_RS12825 (QN061_12825) ampD 2748576..2749127 (-) 552 WP_020331981.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QN061_RS12830 (QN061_12830) nadC 2749280..2750167 (+) 888 WP_047459093.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QN061_RS12835 (QN061_12835) pilA 2750399..2750821 (+) 423 WP_158125403.1 pilin Machinery gene
  QN061_RS12840 (QN061_12840) pilB 2750828..2752516 (+) 1689 WP_222733531.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QN061_RS12845 (QN061_12845) pilC 2752552..2753778 (+) 1227 WP_143683928.1 type II secretion system F family protein Machinery gene
  QN061_RS12850 (QN061_12850) pilD 2753830..2754699 (+) 870 WP_143683929.1 A24 family peptidase Machinery gene
  QN061_RS12855 (QN061_12855) coaE 2754702..2755310 (+) 609 WP_143683930.1 dephospho-CoA kinase -
  QN061_RS12860 (QN061_12860) zapD 2755343..2756083 (+) 741 WP_020332196.1 cell division protein ZapD -
  QN061_RS12865 (QN061_12865) yacG 2756138..2756335 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  QN061_RS12870 (QN061_12870) parC 2756386..2758659 (-) 2274 WP_143683500.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44700.94 Da        Isoelectric Point: 10.5318

>NTDB_id=837434 QN061_RS12845 WP_143683928.1 2752552..2753778(+) (pilC) [Vibrio fluvialis strain SD21SC3889PM]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLSLVFG
IKAARKKSFVVRIKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=837434 QN061_RS12845 WP_143683928.1 2752552..2753778(+) (pilC) [Vibrio fluvialis strain SD21SC3889PM]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAGAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCAGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCGATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGTACTGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGCGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGAGCTTGGTGTTTGGC
ATCAAAGCGGCGCGGAAAAAATCCTTCGTGGTCCGTATTAAAACCAGCCAGCTCAGCCTGCGTTTTCCCATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.765

100

0.868
  pilC Vibrio campbellii strain DS40M4

72.346

99.265

0.718
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Legionella pneumophila strain ERS1305867

41.103

97.794

0.402
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Pseudomonas stutzeri DSM 10701

39.899

97.059

0.387
  pilG Neisseria gonorrhoeae MS11

39.599

97.794

0.387
  pilG Neisseria meningitidis 44/76-A

39.098

97.794

0.382