Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QN061_RS12850 Genome accession   NZ_CP126305
Coordinates   2753830..2754699 (+) Length   289 a.a.
NCBI ID   WP_143683929.1    Uniprot ID   -
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748830..2759699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS12830 (QN061_12830) nadC 2749280..2750167 (+) 888 WP_047459093.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QN061_RS12835 (QN061_12835) pilA 2750399..2750821 (+) 423 WP_158125403.1 pilin Machinery gene
  QN061_RS12840 (QN061_12840) pilB 2750828..2752516 (+) 1689 WP_222733531.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QN061_RS12845 (QN061_12845) pilC 2752552..2753778 (+) 1227 WP_143683928.1 type II secretion system F family protein Machinery gene
  QN061_RS12850 (QN061_12850) pilD 2753830..2754699 (+) 870 WP_143683929.1 A24 family peptidase Machinery gene
  QN061_RS12855 (QN061_12855) coaE 2754702..2755310 (+) 609 WP_143683930.1 dephospho-CoA kinase -
  QN061_RS12860 (QN061_12860) zapD 2755343..2756083 (+) 741 WP_020332196.1 cell division protein ZapD -
  QN061_RS12865 (QN061_12865) yacG 2756138..2756335 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  QN061_RS12870 (QN061_12870) parC 2756386..2758659 (-) 2274 WP_143683500.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32272.34 Da        Isoelectric Point: 6.4660

>NTDB_id=837435 QN061_RS12850 WP_143683929.1 2753830..2754699(+) (pilD) [Vibrio fluvialis strain SD21SC3889PM]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSTPRSTCPHCETPIRVI
DNIPVLSWLLLRGKCSNCQGPISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWAGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=837435 QN061_RS12850 WP_143683929.1 2753830..2754699(+) (pilD) [Vibrio fluvialis strain SD21SC3889PM]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGCGAGTGGCGTCAGGAGTGTGCGGAATCCTTTCCCGAGTATCATA
TTGAGCCGCCTCAGGGTATTTTAACGCTGAGCACGCCACGTTCCACCTGCCCGCATTGCGAAACGCCGATCCGGGTTATC
GACAACATTCCGGTACTGAGCTGGCTGTTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCCCTATCAGCGCGCGTTATCC
ACTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACGCTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCGGATCAGCTTACTCTGCCC
CTACTCTGGGCTGGTATTGCGCTGGCGTTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
GGGTTATCTGTCGTTATGGTCGGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTGTTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACCGATCATCATTCTGATGTCATCTCTGGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCGTTCGGACCTTATCTGGCGATTGC
AGGCTGGCTGTCTCTGCTGTTTGGTCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

78.819

99.654

0.785
  pilD Vibrio campbellii strain DS40M4

78.125

99.654

0.779
  pilD Acinetobacter baumannii D1279779

53.285

94.81

0.505
  pilD Acinetobacter nosocomialis M2

52.92

94.81

0.502
  pilD Neisseria gonorrhoeae MS11

50.929

93.08

0.474