Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH48_RS29165 Genome accession   NZ_CP126115
Coordinates   5980839..5981225 (-) Length   128 a.a.
NCBI ID   WP_283953120.1    Uniprot ID   -
Organism   Neobacillus sp. YX16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5971866..5985976 5980839..5981225 within 0


Gene organization within MGE regions


Location: 5971866..5985976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS29125 (QNH48_29125) - 5971866..5973497 (+) 1632 WP_283953113.1 SWIM zinc finger family protein -
  QNH48_RS29130 (QNH48_29130) - 5973810..5976740 (+) 2931 WP_283953114.1 DEAD/DEAH box helicase -
  QNH48_RS29135 (QNH48_29135) - 5976906..5977484 (+) 579 WP_283953115.1 CBO0543 family protein -
  QNH48_RS29140 (QNH48_29140) - 5977521..5978591 (-) 1071 WP_283953116.1 3D domain-containing protein -
  QNH48_RS29145 (QNH48_29145) - 5979006..5979233 (-) 228 WP_283953117.1 DUF3951 domain-containing protein -
  QNH48_RS29150 (QNH48_29150) - 5979277..5979756 (-) 480 WP_283953118.1 Rpn family recombination-promoting nuclease/putative transposase -
  QNH48_RS29155 (QNH48_29155) - 5979753..5980145 (-) 393 WP_283953119.1 hypothetical protein -
  QNH48_RS29160 (QNH48_29160) - 5980564..5980842 (-) 279 WP_095247595.1 hypothetical protein -
  QNH48_RS29165 (QNH48_29165) ssbB 5980839..5981225 (-) 387 WP_283953120.1 single-stranded DNA-binding protein Machinery gene
  QNH48_RS29170 (QNH48_29170) - 5981487..5981918 (+) 432 WP_283953121.1 YwpF family protein -
  QNH48_RS29175 (QNH48_29175) - 5981961..5982329 (-) 369 WP_283953122.1 hypothetical protein -
  QNH48_RS29180 (QNH48_29180) fabZ 5982443..5982868 (-) 426 WP_095247592.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH48_RS29185 (QNH48_29185) - 5982954..5983286 (-) 333 WP_283953123.1 DNA-directed RNA polymerase subunit beta -
  QNH48_RS29190 (QNH48_29190) - 5983570..5984571 (-) 1002 WP_283953124.1 rod shape-determining protein -
  QNH48_RS29195 (QNH48_29195) spoIIID 5984826..5985098 (-) 273 WP_007086083.1 sporulation transcriptional regulator SpoIIID -
  QNH48_RS29200 (QNH48_29200) - 5985671..5985976 (+) 306 WP_283953125.1 MGMT family protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14214.26 Da        Isoelectric Point: 9.9003

>NTDB_id=836665 QNH48_RS29165 WP_283953120.1 5980839..5981225(-) (ssbB) [Neobacillus sp. YX16]
MINQVTIVGRLTRDPELRKTSEGLSVTSITLAVSRQFRNQHGEIEADFVQCTLWKKAAENTARYCRKGSIVGVTGRLHSR
QYDNKEGKRVYVTEVVAESIQFLGAKPNITPAGPPPVTVSVTKEELPF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=836665 QNH48_RS29165 WP_283953120.1 5980839..5981225(-) (ssbB) [Neobacillus sp. YX16]
ATGATTAATCAAGTCACAATCGTCGGAAGACTCACAAGGGATCCGGAGTTAAGAAAAACAAGTGAAGGGCTGTCGGTAAC
GTCTATCACCTTGGCTGTTAGCCGTCAATTCCGAAATCAGCATGGGGAAATTGAGGCGGATTTCGTTCAATGCACCCTTT
GGAAAAAGGCAGCTGAAAATACTGCCCGATACTGTCGGAAAGGCTCGATCGTTGGAGTAACAGGCAGGCTGCATTCGCGG
CAATATGACAATAAAGAGGGAAAAAGGGTTTATGTGACAGAGGTAGTAGCCGAATCGATTCAATTTTTAGGTGCAAAGCC
CAACATCACACCAGCGGGCCCCCCTCCGGTTACGGTTTCCGTTACGAAGGAGGAGCTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.682

83.594

0.516
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

82.813

0.477
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.182

100

0.445
  ssb Latilactobacillus sakei subsp. sakei 23K

55.34

80.469

0.445
  ssbB/cilA Streptococcus mitis NCTC 12261

42.424

100

0.437
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

100

0.43
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

100

0.43
  ssbB/cilA Streptococcus pneumoniae D39

41.667

100

0.43
  ssbB/cilA Streptococcus pneumoniae R6

41.667

100

0.43
  ssbB/cilA Streptococcus mitis SK321

40.909

100

0.422
  ssbA Streptococcus mutans UA159

40.152

100

0.414