Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U7118_RS00800 Genome accession   NZ_CP141283
Coordinates   145080..145769 (+) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain DKU_09     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 140080..150769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS00780 (U7118_00780) iolG 141234..142268 (+) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  U7118_RS00785 (U7118_00785) iolH 142288..143157 (+) 870 WP_324271413.1 sugar phosphate isomerase/epimerase -
  U7118_RS00790 (U7118_00790) iolI 143243..144079 (+) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  U7118_RS00795 (U7118_00795) iolJ 144100..144972 (+) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  U7118_RS00800 (U7118_00800) braR 145080..145769 (+) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  U7118_RS00805 (U7118_00805) yxdK 145766..146743 (+) 978 WP_324271414.1 two-component system sensor histidine kinase YxdK -
  U7118_RS00810 (U7118_00810) tpeL 146887..147620 (+) 734 Protein_158 ABC transporter ATP-binding protein -
  U7118_RS00815 (U7118_00815) yxdM 147595..149479 (+) 1885 Protein_159 ABC transporter permease YxdM -
  U7118_RS00820 (U7118_00820) yxeA 149493..149840 (+) 348 WP_003227084.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=836665 U7118_RS00800 WP_003243527.1 145080..145769(+) (braR) [Bacillus subtilis strain DKU_09]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=836665 U7118_RS00800 WP_003243527.1 145080..145769(+) (braR) [Bacillus subtilis strain DKU_09]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406