Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH43_RS26515 Genome accession   NZ_CP126106
Coordinates   5567432..5567794 (-) Length   120 a.a.
NCBI ID   WP_076368327.1    Uniprot ID   A0A9X8R9A9
Organism   Peribacillus simplex strain RZ14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5562432..5572794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS26500 (QNH43_26500) - 5563379..5564995 (-) 1617 WP_283916321.1 ABC transporter substrate-binding protein -
  QNH43_RS26505 (QNH43_26505) - 5565038..5566006 (-) 969 WP_192207231.1 dipeptide ABC transporter ATP-binding protein -
  QNH43_RS26510 (QNH43_26510) - 5565987..5566991 (-) 1005 WP_185150822.1 ABC transporter ATP-binding protein -
  QNH43_RS26515 (QNH43_26515) ssbB 5567432..5567794 (-) 363 WP_076368327.1 single-stranded DNA-binding protein Machinery gene
  QNH43_RS26520 (QNH43_26520) - 5568156..5568590 (+) 435 WP_283916322.1 YwpF family protein -
  QNH43_RS26525 (QNH43_26525) - 5568706..5569002 (-) 297 WP_283916323.1 hypothetical protein -
  QNH43_RS26530 (QNH43_26530) fabZ 5569293..5569721 (-) 429 WP_283916324.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH43_RS26535 (QNH43_26535) - 5569849..5570103 (-) 255 WP_283916325.1 DNA-directed RNA polymerase subunit beta -
  QNH43_RS26540 (QNH43_26540) - 5570271..5571050 (-) 780 WP_283918459.1 flagellar hook-basal body protein -
  QNH43_RS26545 (QNH43_26545) - 5571063..5571332 (-) 270 WP_283916326.1 flagellar basal body protein -
  QNH43_RS26550 (QNH43_26550) - 5571611..5572612 (-) 1002 WP_283916327.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13642.54 Da        Isoelectric Point: 9.6889

>NTDB_id=836263 QNH43_RS26515 WP_076368327.1 5567432..5567794(-) (ssbB) [Peribacillus simplex strain RZ14]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGATIGITGRIQTR
RYENQEGKFVYVTEVVAERVQFIGSKQNDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=836263 QNH43_RS26515 WP_076368327.1 5567432..5567794(-) (ssbB) [Peribacillus simplex strain RZ14]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCCGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
CAATATCACGTTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCGGACTTCGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGTGCAACAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGCAAATTTGTATATGTAACTGAAGTGGTTGCCGAGAGGGTTCAATTCATTGGGTCAAAACA
AAATGATGTTAAGCCCAAGGATTTTGAACATATTGGTCTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375