Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH50_RS25115 Genome accession   NZ_CP126092
Coordinates   5127981..5128343 (-) Length   120 a.a.
NCBI ID   WP_283932394.1    Uniprot ID   -
Organism   Peribacillus simplex strain D9_B_73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5122981..5133343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS25100 (QNH50_25100) - 5123881..5125497 (-) 1617 WP_283932393.1 ABC transporter substrate-binding protein -
  QNH50_RS25105 (QNH50_25105) - 5125540..5126508 (-) 969 WP_230302999.1 dipeptide ABC transporter ATP-binding protein -
  QNH50_RS25110 (QNH50_25110) - 5126489..5127493 (-) 1005 WP_076368326.1 ABC transporter ATP-binding protein -
  QNH50_RS25115 (QNH50_25115) ssbB 5127981..5128343 (-) 363 WP_283932394.1 single-stranded DNA-binding protein Machinery gene
  QNH50_RS25120 (QNH50_25120) - 5128704..5129138 (+) 435 WP_230303001.1 YwpF-like family protein -
  QNH50_RS25125 (QNH50_25125) - 5129252..5129548 (-) 297 WP_230303002.1 hypothetical protein -
  QNH50_RS25130 (QNH50_25130) fabZ 5129838..5130266 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH50_RS25135 (QNH50_25135) - 5130395..5130649 (-) 255 WP_098371633.1 DNA-directed RNA polymerase subunit beta -
  QNH50_RS25140 (QNH50_25140) - 5130818..5131660 (-) 843 WP_230303003.1 flagellar hook-basal body protein -
  QNH50_RS25145 (QNH50_25145) - 5131716..5132555 (-) 840 WP_283932395.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13632.41 Da        Isoelectric Point: 9.3528

>NTDB_id=835442 QNH50_RS25115 WP_283932394.1 5127981..5128343(-) (ssbB) [Peribacillus simplex strain D9_B_73]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTDGNYEADFVQCIIWKKSAENTAQYCKKGATIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGSKQNDGKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=835442 QNH50_RS25115 WP_283932394.1 5127981..5128343(-) (ssbB) [Peribacillus simplex strain D9_B_73]
ATGATTAACCAAGTTACCCTTGTCGGCAGGCTTACGAAGGATCCTGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
CAATATCACGTTAGCAGTCAACCGGAACTTCCGTAATACTGACGGAAACTATGAGGCGGACTTCGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGTGCAACAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGCAAATATGTATATGTAACTGAAGTGGTTGCCGAGAGGGTTCAATTCATTGGGTCTAAACA
AAATGATGGTAAGCCCAAAGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

52.893

100

0.533
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

88.333

0.408
  ssbA Streptococcus mutans UA159

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375