Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QNH33_RS25610 Genome accession   NZ_CP126085
Coordinates   5285236..5285598 (-) Length   120 a.a.
NCBI ID   WP_214811232.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CF20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5280236..5290598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH33_RS25595 (QNH33_25595) - 5281181..5282797 (-) 1617 WP_283906340.1 ABC transporter substrate-binding protein -
  QNH33_RS25600 (QNH33_25600) - 5282840..5283808 (-) 969 WP_127777640.1 dipeptide ABC transporter ATP-binding protein -
  QNH33_RS25605 (QNH33_25605) - 5283789..5284793 (-) 1005 WP_152908346.1 ABC transporter ATP-binding protein -
  QNH33_RS25610 (QNH33_25610) ssbB 5285236..5285598 (-) 363 WP_214811232.1 single-stranded DNA-binding protein Machinery gene
  QNH33_RS25615 (QNH33_25615) - 5285958..5286392 (+) 435 WP_053536876.1 YwpF family protein -
  QNH33_RS25620 (QNH33_25620) - 5286507..5286800 (-) 294 WP_264895985.1 hypothetical protein -
  QNH33_RS25625 (QNH33_25625) fabZ 5287090..5287518 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QNH33_RS25630 (QNH33_25630) - 5287646..5287900 (-) 255 WP_053087418.1 DNA-directed RNA polymerase subunit beta -
  QNH33_RS26750 - 5288069..5288509 (-) 441 WP_347343173.1 flagellar basal body rod C-terminal domain-containing protein -
  QNH33_RS26755 - 5288590..5288913 (-) 324 WP_347343174.1 flagellar basal body protein -
  QNH33_RS25640 (QNH33_25640) - 5288962..5289801 (-) 840 WP_283906341.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13642.54 Da        Isoelectric Point: 9.6262

>NTDB_id=835028 QNH33_RS25610 WP_214811232.1 5285236..5285598(-) (ssbB) [Peribacillus frigoritolerans strain CF20]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGTKQNDGKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=835028 QNH33_RS25610 WP_214811232.1 5285236..5285598(-) (ssbB) [Peribacillus frigoritolerans strain CF20]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCTGATGGCAAGGCTGTTTC
CAATATTACATTAGCGGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATCGGAACAAAACA
AAATGATGGTAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.526

95

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

52.066

100

0.525
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.34

88.333

0.392
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367