Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VNTUMSATTG_RS18390 Genome accession   NZ_AP024087
Coordinates   4010299..4011402 (-) Length   367 a.a.
NCBI ID   WP_200766381.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4005299..4016402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS18360 (VNTUMSATTG_35550) hemF 4005890..4006807 (-) 918 WP_022552141.1 oxygen-dependent coproporphyrinogen oxidase -
  VNTUMSATTG_RS18365 (VNTUMSATTG_35560) - 4006830..4007387 (-) 558 WP_022592591.1 L-threonylcarbamoyladenylate synthase -
  VNTUMSATTG_RS18370 (VNTUMSATTG_35570) purE 4007579..4008064 (+) 486 WP_200766378.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VNTUMSATTG_RS18375 (VNTUMSATTG_35580) - 4008070..4009197 (+) 1128 WP_200766379.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VNTUMSATTG_RS18380 (VNTUMSATTG_35590) - 4009242..4009811 (-) 570 WP_200766380.1 type I DNA topoisomerase -
  VNTUMSATTG_RS18385 (VNTUMSATTG_35600) - 4009823..4010296 (-) 474 WP_004406478.1 DUF494 family protein -
  VNTUMSATTG_RS18390 (VNTUMSATTG_35610) dprA 4010299..4011402 (-) 1104 WP_200766381.1 DNA-processing protein DprA Machinery gene
  VNTUMSATTG_RS18395 (VNTUMSATTG_35620) - 4011404..4012498 (-) 1095 WP_200766382.1 LysM peptidoglycan-binding domain-containing protein -
  VNTUMSATTG_RS18400 (VNTUMSATTG_35630) def 4012616..4013137 (+) 522 WP_200766383.1 peptide deformylase -
  VNTUMSATTG_RS18405 (VNTUMSATTG_35640) fmt 4013170..4014117 (+) 948 WP_200766384.1 methionyl-tRNA formyltransferase -
  VNTUMSATTG_RS18410 (VNTUMSATTG_35650) rsmB 4014204..4015484 (+) 1281 WP_200766385.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39394.75 Da        Isoelectric Point: 5.4040

>NTDB_id=83406 VNTUMSATTG_RS18390 WP_200766381.1 4010299..4011402(-) (dprA) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MTNNELRAWLTLSFTPQLGGQSLTRLLAIDSPVNILSSGPERWQAIGLKPKQIAYLQAQSHPEVEESLEWGADSDSHHIL
TLLDTDYPPLLKEVPSPPTALFVKGDVLSLSAPQIAMVGSRNASIEGLQTAKAFAKDLSGNGLVVTSGLALGVDGYAHDG
ALEGGGRTVAVLGSGLECIYPARHRKLAARVVEQGALVSEFRPNTKPRPEHFPRRNRIISGLSVGVFVVEAAERSGSLIT
ARYAAEQGRDVFALPGSIHNPNARGGNALIKSGACLVQSSQDILQEVENLVSWSFSQQTSIFSEEAEQEELPFPELMANV
GIEATPVDILAERTHIPVHEVMMQLLELELSGHIVAVPGGYIRKGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=83406 VNTUMSATTG_RS18390 WP_200766381.1 4010299..4011402(-) (dprA) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGACGAACAATGAGTTACGAGCCTGGCTGACCTTAAGTTTCACCCCACAATTAGGCGGCCAGTCGTTGACTCGATTGCT
CGCTATTGATTCTCCCGTCAACATACTGTCTTCCGGTCCAGAGCGCTGGCAAGCCATTGGTCTTAAACCAAAACAGATCG
CTTACCTACAAGCTCAATCCCACCCAGAAGTAGAAGAAAGCCTTGAGTGGGGGGCGGATTCTGATTCCCATCATATTCTC
ACTTTGCTGGATACTGATTATCCGCCTCTGTTGAAAGAAGTCCCTTCGCCGCCCACCGCACTCTTTGTGAAAGGTGACGT
GTTGTCTTTGAGTGCACCTCAAATCGCGATGGTGGGTAGCCGAAATGCCAGTATTGAAGGGCTGCAAACCGCAAAAGCCT
TCGCTAAAGACCTATCAGGTAATGGGCTGGTTGTGACCAGCGGTCTGGCTTTAGGTGTAGATGGGTATGCTCATGATGGT
GCACTGGAAGGAGGTGGCAGAACGGTTGCTGTATTGGGCTCCGGGTTGGAGTGTATTTACCCGGCTAGGCATCGAAAGCT
CGCTGCCAGAGTTGTCGAGCAAGGGGCATTGGTGTCGGAATTTCGCCCGAACACCAAACCTCGTCCTGAACATTTTCCCC
GCCGTAACCGAATCATCAGTGGATTATCGGTAGGTGTATTTGTCGTAGAAGCGGCAGAGCGCAGTGGCTCACTCATTACT
GCCCGCTATGCCGCAGAGCAGGGGCGCGATGTTTTTGCCTTACCGGGCTCAATTCATAACCCCAATGCCCGAGGTGGTAA
TGCGCTGATCAAGTCAGGTGCCTGCTTGGTTCAGTCCTCCCAAGATATCCTCCAGGAAGTGGAAAATTTAGTTTCTTGGT
CGTTTTCTCAACAAACATCTATATTTAGTGAAGAAGCCGAGCAAGAAGAATTGCCATTTCCCGAACTAATGGCTAACGTA
GGAATAGAAGCAACACCCGTTGATATTCTTGCAGAGCGGACCCATATACCTGTGCATGAAGTCATGATGCAACTACTGGA
ACTTGAGCTTTCAGGGCATATTGTTGCAGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.738

98.91

0.64
  dprA Vibrio cholerae strain A1552

59.03

100

0.597
  dprA Glaesserella parasuis strain SC1401

45.822

100

0.463
  dprA Neisseria meningitidis strain C311

38.75

100

0.422
  dprA Neisseria meningitidis MC58

38.75

100

0.422
  dprA Neisseria gonorrhoeae strain FA1090

38.191

100

0.414
  dprA Neisseria gonorrhoeae MS11

37.688

100

0.409
  dprA Haemophilus influenzae Rd KW20

43.023

93.733

0.403
  dprA Legionella pneumophila strain ERS1305867

49.333

81.744

0.403
  dprA Acinetobacter baylyi ADP1

39.181

93.188

0.365

Multiple sequence alignment