Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QLH64_RS21290 Genome accession   NZ_CP125961
Coordinates   4942477..4943694 (+) Length   405 a.a.
NCBI ID   WP_057450868.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain R401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4937477..4948694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH64_RS21270 (QLH64_21270) - 4938804..4939100 (+) 297 WP_057450870.1 DUF2845 domain-containing protein -
  QLH64_RS21275 (QLH64_21275) - 4939428..4939781 (-) 354 WP_003205664.1 BON domain-containing protein -
  QLH64_RS21280 (QLH64_21280) - 4940127..4940549 (-) 423 WP_053163361.1 pilin -
  QLH64_RS21285 (QLH64_21285) pilB 4940774..4942474 (+) 1701 WP_057450869.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QLH64_RS21290 (QLH64_21290) pilC 4942477..4943694 (+) 1218 WP_057450868.1 type II secretion system F family protein Machinery gene
  QLH64_RS21295 (QLH64_21295) pilD 4943696..4944565 (+) 870 WP_057450867.1 A24 family peptidase Machinery gene
  QLH64_RS21300 (QLH64_21300) coaE 4944565..4945188 (+) 624 WP_057450866.1 dephospho-CoA kinase -
  QLH64_RS21305 (QLH64_21305) yacG 4945185..4945391 (+) 207 WP_057450865.1 DNA gyrase inhibitor YacG -
  QLH64_RS21310 (QLH64_21310) - 4945388..4945603 (-) 216 WP_013694234.1 hypothetical protein -
  QLH64_RS21315 (QLH64_21315) - 4945667..4946353 (-) 687 WP_057450864.1 energy-coupling factor ABC transporter permease -
  QLH64_RS21320 (QLH64_21320) - 4946391..4946804 (-) 414 WP_057450863.1 tautomerase family protein -
  QLH64_RS21325 (QLH64_21325) - 4946956..4947855 (+) 900 WP_057450862.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44272.07 Da        Isoelectric Point: 10.0786

>NTDB_id=833712 QLH64_RS21290 WP_057450868.1 4942477..4943694(+) (pilC) [Pseudomonas brassicacearum strain R401]
MAVKAVKTDVYTWEGKDRKGAKMTGELTGQSPALVKAQLRKQGINPQKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPAAVVLVAAVVTGILLVKVVPQFESVFAGFGAKLPAFTLMVIGLSEFMQQWWWIVLGGLVGAFFGVK
YALRRSERFRDWRDKWLLKLPLIGTLLYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIKQDVSTGM
QLNFSMRASGIFPNLAVQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=833712 QLH64_RS21290 WP_057450868.1 4942477..4943694(+) (pilC) [Pseudomonas brassicacearum strain R401]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTATACGTGGGAAGGCAAAGACCGCAAAGGCGCGAAAATGACCGGCGAGCT
GACGGGCCAGAGCCCGGCGCTGGTCAAGGCACAGCTGCGCAAACAAGGCATCAACCCGCAGAAGGTGCGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAGCGCATCAAGCCTCTGGATATCGCCCTCTTCACCCGCCAGATGGCGACAATGCTCAAG
GCTGGCGTGCCGCTGTTGCAGGCGTTCGACATCATTGGCGAAGGCTTCGACAACCCCAACATGCGCAAGCTGGTGGACGA
GGTGAAGCAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCGGCGCTGCGCAAGTGCCCGCAATATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAACAGGCCGGTGCCCTGGACACGCTGCTGGACCGGGTCGCGACCTACAAGGAAAAGAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGGCGGCCGTGGTCCTCGTAGCCGCAGTGGTCACGGGGAT
CCTGCTGGTCAAGGTAGTGCCGCAGTTCGAATCGGTATTCGCCGGGTTCGGCGCGAAACTGCCGGCCTTCACGCTGATGG
TCATCGGCCTGTCGGAGTTCATGCAGCAATGGTGGTGGATAGTGCTGGGCGGGCTGGTGGGTGCTTTTTTTGGCGTGAAA
TACGCGCTCAGGCGTTCGGAGCGCTTTCGCGACTGGCGCGACAAATGGCTGCTCAAGCTGCCGCTGATAGGCACCTTGCT
GTACAAGTCCGCCGTGGCCCGCTACGCCCGCACGCTTTCCACCACCTTCGCCGCCGGCGTGCCGCTGGTGGAGGCCCTGG
ATTCGGTGTCAGGCGCCACCGGCAACGTGGTGTTCAAACGTGCCGTGCAGCGCATCAAGCAGGACGTCTCGACCGGCATG
CAGTTGAATTTCTCCATGCGTGCCTCAGGGATCTTTCCGAACCTTGCGGTCCAGATGACCGCCATCGGCGAGGAATCCGG
TGCGCTGGACGACATGCTCGACAAGGTGGCGAGCTTTTATGAGGCCGAGGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTCCTGGGGGTGGTCGTCGGTGGCCTGGTGGTTGCCATGTACTTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

76.543

100

0.765
  pilC Acinetobacter baylyi ADP1

59.799

98.272

0.588
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilC Vibrio campbellii strain DS40M4

44.192

97.778

0.432
  pilG Neisseria gonorrhoeae MS11

43.532

99.259

0.432
  pilG Neisseria meningitidis 44/76-A

43.035

99.259

0.427
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Thermus thermophilus HB27

37.157

99.012

0.368