Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QLH64_RS21295 | Genome accession | NZ_CP125961 |
| Coordinates | 4943696..4944565 (+) | Length | 289 a.a. |
| NCBI ID | WP_057450867.1 | Uniprot ID | A0A0Q7A1X3 |
| Organism | Pseudomonas brassicacearum strain R401 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4938696..4949565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLH64_RS21270 (QLH64_21270) | - | 4938804..4939100 (+) | 297 | WP_057450870.1 | DUF2845 domain-containing protein | - |
| QLH64_RS21275 (QLH64_21275) | - | 4939428..4939781 (-) | 354 | WP_003205664.1 | BON domain-containing protein | - |
| QLH64_RS21280 (QLH64_21280) | - | 4940127..4940549 (-) | 423 | WP_053163361.1 | pilin | - |
| QLH64_RS21285 (QLH64_21285) | pilB | 4940774..4942474 (+) | 1701 | WP_057450869.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QLH64_RS21290 (QLH64_21290) | pilC | 4942477..4943694 (+) | 1218 | WP_057450868.1 | type II secretion system F family protein | Machinery gene |
| QLH64_RS21295 (QLH64_21295) | pilD | 4943696..4944565 (+) | 870 | WP_057450867.1 | A24 family peptidase | Machinery gene |
| QLH64_RS21300 (QLH64_21300) | coaE | 4944565..4945188 (+) | 624 | WP_057450866.1 | dephospho-CoA kinase | - |
| QLH64_RS21305 (QLH64_21305) | yacG | 4945185..4945391 (+) | 207 | WP_057450865.1 | DNA gyrase inhibitor YacG | - |
| QLH64_RS21310 (QLH64_21310) | - | 4945388..4945603 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| QLH64_RS21315 (QLH64_21315) | - | 4945667..4946353 (-) | 687 | WP_057450864.1 | energy-coupling factor ABC transporter permease | - |
| QLH64_RS21320 (QLH64_21320) | - | 4946391..4946804 (-) | 414 | WP_057450863.1 | tautomerase family protein | - |
| QLH64_RS21325 (QLH64_21325) | - | 4946956..4947855 (+) | 900 | WP_057450862.1 | LysR substrate-binding domain-containing protein | - |
| QLH64_RS21330 (QLH64_21330) | - | 4948401..4949027 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| QLH64_RS21335 (QLH64_21335) | - | 4949024..4949551 (+) | 528 | WP_057450861.1 | MOSC domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31903.04 Da Isoelectric Point: 8.0578
>NTDB_id=833713 QLH64_RS21295 WP_057450867.1 4943696..4944565(+) (pilD) [Pseudomonas brassicacearum strain R401]
MPLSEFFVLYPPAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTEVACGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPPAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTEVACGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=833713 QLH64_RS21295 WP_057450867.1 4943696..4944565(+) (pilD) [Pseudomonas brassicacearum strain R401]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCCGGCTTTCGTGCTCGTTGCAGCACTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCAGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
CTACCCCCTGACCGAAGTGGCCTGCGGTGCGTTATCGGCGTTCGTTGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTGTCGGGGTGATTGTGCTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCCTTTGGACCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCCGGCTTTCGTGCTCGTTGCAGCACTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCAGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
CTACCCCCTGACCGAAGTGGCCTGCGGTGCGTTATCGGCGTTCGTTGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTGTCGGGGTGATTGTGCTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCCTTTGGACCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.113 |
98.27 |
0.512 |
| pilD | Vibrio campbellii strain DS40M4 |
50.526 |
98.616 |
0.498 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |
| pilD | Acinetobacter baumannii D1279779 |
47.687 |
97.232 |
0.464 |
| pilD | Acinetobacter nosocomialis M2 |
47.687 |
97.232 |
0.464 |