Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QNH97_RS24190 Genome accession   NZ_CP125957
Coordinates   5525479..5526696 (+) Length   405 a.a.
NCBI ID   WP_283554235.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5520479..5531696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS24170 (QNH97_24170) - 5521878..5522174 (+) 297 WP_283554232.1 DUF2845 domain-containing protein -
  QNH97_RS24175 (QNH97_24175) - 5522509..5522862 (-) 354 WP_025215523.1 BON domain-containing protein -
  QNH97_RS24180 (QNH97_24180) - 5523135..5523551 (-) 417 WP_283554233.1 pilin -
  QNH97_RS24185 (QNH97_24185) pilB 5523776..5525476 (+) 1701 WP_283554234.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QNH97_RS24190 (QNH97_24190) pilC 5525479..5526696 (+) 1218 WP_283554235.1 type II secretion system F family protein Machinery gene
  QNH97_RS24195 (QNH97_24195) pilD 5526698..5527567 (+) 870 WP_283554236.1 A24 family peptidase Machinery gene
  QNH97_RS24200 (QNH97_24200) coaE 5527580..5528203 (+) 624 WP_283554237.1 dephospho-CoA kinase -
  QNH97_RS24205 (QNH97_24205) yacG 5528200..5528406 (+) 207 WP_135847217.1 DNA gyrase inhibitor YacG -
  QNH97_RS24210 (QNH97_24210) - 5528403..5528618 (-) 216 WP_003185533.1 hypothetical protein -
  QNH97_RS24215 (QNH97_24215) - 5528682..5529368 (-) 687 WP_283554238.1 energy-coupling factor ABC transporter permease -
  QNH97_RS24220 (QNH97_24220) - 5529600..5530226 (+) 627 WP_030140261.1 DUF1780 domain-containing protein -
  QNH97_RS24225 (QNH97_24225) - 5530223..5530750 (+) 528 WP_283554239.1 MOSC domain-containing protein -
  QNH97_RS24230 (QNH97_24230) - 5530803..5530976 (+) 174 WP_283554240.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44269.87 Da        Isoelectric Point: 9.7996

>NTDB_id=833667 QNH97_RS24190 WP_283554235.1 5525479..5526696(+) (pilC) [Pseudomonas sp. G2-4]
MAVKAVKTDVYTWEGKDRKGTKMSGELTGQSPALIKAQLRKQGISPEKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDEVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPAAVVVVAAVVTGILLVKVVPQFESVFSGFGAELPAFTVMVIGLSEFLQEWWWVVLGGLVGAFFGVK
YALRRSERFRDWRDKWLLKLPLIGSLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=833667 QNH97_RS24190 WP_283554235.1 5525479..5526696(+) (pilC) [Pseudomonas sp. G2-4]
ATGGCGGTCAAAGCAGTCAAAACCGATGTCTACACGTGGGAAGGCAAGGACCGCAAAGGCACGAAAATGAGCGGCGAACT
GACCGGTCAGAGCCCAGCCCTGATCAAGGCTCAGTTACGCAAACAGGGCATCAGCCCGGAGAAGGTACGCAAGAAGTCCA
CCTCGATATTCAGCAAGGGCAAGCGCATCAAGCCGTTGGACATCGCCCTGTTCACCCGCCAGATGGCGACGATGCTCAAG
GCCGGCGTGCCCCTGTTGCAGGCGTTCGACATCATTGGCGAGGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCCGGCAACAGCTTCGCGGCGTCGTTGCGCAAGTGCCCGCAGTATTTCGACGAGTTGTACT
GCAACTTGGTGGACGCCGGTGAACAGGCCGGTGCCCTGGACACGTTGCTGGACCGGGTCGCGACCTACAAGGAAAAGAGC
GAAGCGCTCAAAGCCAAGATCAAGAAAGCCATGACCTACCCGGCGGCCGTGGTGGTGGTCGCGGCCGTGGTCACCGGCAT
CCTGTTGGTCAAGGTGGTGCCGCAATTCGAGTCGGTCTTTTCAGGGTTTGGCGCAGAGCTACCGGCCTTCACGGTGATGG
TCATTGGCCTGTCGGAGTTCTTGCAGGAATGGTGGTGGGTAGTGCTTGGCGGTTTGGTCGGGGCGTTTTTTGGTGTGAAA
TACGCCCTCAGGCGTTCCGAGCGTTTTCGCGACTGGCGCGATAAATGGCTGCTCAAGCTGCCGCTGATAGGCAGCTTGAT
GTACAAGTCCGCCGTGGCTCGCTACGCCCGGACGCTGTCCACCACATTCGCCGCCGGCGTACCGCTGGTGGAGGCCCTGG
ATTCGGTCTCGGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCGGTGCAGCGCATTCGCCAGGATGTCTCGACCGGGATG
CAGTTGAATTTTTCCATGCGCGCCTCCGGCATCTTTCCCAACCTGGCGATCCAGATGACCGCCATCGGCGAAGAATCCGG
CGCGTTGGACGACATGCTCGACAAGGTGGCGAGTTTTTATGAGGCCGAGGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTCCTGGGGGTGGTCGTCGGTGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTTGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.748
  pilC Acinetobacter baylyi ADP1

59.548

98.272

0.585
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilC Vibrio campbellii strain DS40M4

43.687

97.778

0.427
  pilG Neisseria meningitidis 44/76-A

42.786

99.259

0.425
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Thermus thermophilus HB27

37.406

99.012

0.37