Detailed information NTG0833668

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QNH97_RS24195
• Genome accession: NZ_CP125957
• Coordinates: 5526698..5527567 (+)
• Length: 289 a.a.
• NCBI ID: WP_283554236.1
• Uniprot ID: -
• Organism: Pseudomonas sp. G2-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5521698..5532567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH97_RS24170 (QNH97_24170)	-	5521878..5522174 (+)	297	WP_283554232.1	DUF2845 domain-containing protein	-
QNH97_RS24175 (QNH97_24175)	-	5522509..5522862 (-)	354	WP_025215523.1	BON domain-containing protein	-
QNH97_RS24180 (QNH97_24180)	-	5523135..5523551 (-)	417	WP_283554233.1	pilin	-
QNH97_RS24185 (QNH97_24185)	pilB	5523776..5525476 (+)	1701	WP_283554234.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QNH97_RS24190 (QNH97_24190)	pilC	5525479..5526696 (+)	1218	WP_283554235.1	type II secretion system F family protein	Machinery gene
QNH97_RS24195 (QNH97_24195)	pilD	5526698..5527567 (+)	870	WP_283554236.1	A24 family peptidase	Machinery gene
QNH97_RS24200 (QNH97_24200)	coaE	5527580..5528203 (+)	624	WP_283554237.1	dephospho-CoA kinase	-
QNH97_RS24205 (QNH97_24205)	yacG	5528200..5528406 (+)	207	WP_135847217.1	DNA gyrase inhibitor YacG	-
QNH97_RS24210 (QNH97_24210)	-	5528403..5528618 (-)	216	WP_003185533.1	hypothetical protein	-
QNH97_RS24215 (QNH97_24215)	-	5528682..5529368 (-)	687	WP_283554238.1	energy-coupling factor ABC transporter permease	-
QNH97_RS24220 (QNH97_24220)	-	5529600..5530226 (+)	627	WP_030140261.1	DUF1780 domain-containing protein	-
QNH97_RS24225 (QNH97_24225)	-	5530223..5530750 (+)	528	WP_283554239.1	MOSC domain-containing protein	-
QNH97_RS24230 (QNH97_24230)	-	5530803..5530976 (+)	174	WP_283554240.1	DUF3094 domain-containing protein	-
QNH97_RS24235 (QNH97_24235)	-	5531037..5532335 (+)	1299	WP_283554241.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32003.20 Da
• Isoelectric Point: 7.3460

>NTDB_id=833668 QNH97_RS24195 WP_283554236.1 5526698..5527567(+) (pilD) [Pseudomonas sp. G2-4]
MPLTDFFVLYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRVQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSNCTAPIGRRYPLTELACGALSAFVAWHFGFGWQAVMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFELFVPLDQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGL

Nucleotide

• Length: 870 bp

>NTDB_id=833668 QNH97_RS24195 WP_283554236.1 5526698..5527567(+) (pilD) [Pseudomonas sp. G2-4]
ATGCCCCTGACTGATTTCTTCGTGCTCTATCCCCTGGCCTTCGTGCTCACTGCGTTATTGCTCGGATTGATCGTCGGCAG
CTTCCTCAATGTACTGGTGTGGCGCCTGCCGAAGATGCTCACCCGCGAATGGCGCGTGCAAGCCCATGACCTGCTGGGCC
TGCCGGCCGAAGCGCCCGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCTCACTGTGGTCATCGTATTCGC
GCCTGGGAAAATATCCCGTTGTTGAGCTACCTGATGTTGCGCGGTCGCTGTTCCAACTGCACCGCGCCCATCGGCAGGCG
CTACCCGCTGACCGAACTGGCCTGCGGCGCCTTGTCAGCGTTCGTCGCCTGGCACTTCGGCTTTGGCTGGCAAGCCGTGA
TGGTGATGGTGTTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTATGGCTGGGCTTGATCGTCAACAGCTTCGAGCTGTTCGTGCCCTTGGACCAGGCGATGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGTTGCTGGCGATGCTGGGGGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGTTGCTGTCGTCGCTGGTGGGC
GCCGTGGTCGGGGTCATTGTGCTGCGCCTGCGCGATGCCCCGGGGTCGACGCAGATCCCCTTCGGCCCCTATCTAGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACAGACTTCTATTGGCAGTCTGTCGGTCTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	98.27	0.516
pilD	Vibrio campbellii strain DS40M4	50.526	98.616	0.498
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467
pilD	Acinetobacter baumannii D1279779	46.263	97.232	0.45
pilD	Acinetobacter nosocomialis M2	46.263	97.232	0.45