Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMK51_RS04580 Genome accession   NZ_CP125375
Coordinates   990112..991329 (-) Length   405 a.a.
NCBI ID   WP_320393278.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985112..996329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK51_RS04545 (QMK51_04550) - 985290..985736 (-) 447 WP_320393273.1 potassium channel family protein -
  QMK51_RS04550 (QMK51_04555) - 985759..986859 (-) 1101 WP_320393274.1 AI-2E family transporter -
  QMK51_RS04555 (QMK51_04560) - 987444..988133 (+) 690 WP_320393275.1 energy-coupling factor ABC transporter permease -
  QMK51_RS04560 (QMK51_04565) - 988197..988412 (+) 216 WP_258699036.1 hypothetical protein -
  QMK51_RS04565 (QMK51_04570) yacG 988421..988621 (-) 201 WP_223485972.1 DNA gyrase inhibitor YacG -
  QMK51_RS04570 (QMK51_04575) coaE 988618..989241 (-) 624 WP_320393276.1 dephospho-CoA kinase -
  QMK51_RS04575 (QMK51_04580) pilD 989238..990110 (-) 873 WP_320393277.1 A24 family peptidase Machinery gene
  QMK51_RS04580 (QMK51_04585) pilC 990112..991329 (-) 1218 WP_320393278.1 type II secretion system F family protein Machinery gene
  QMK51_RS04585 (QMK51_04590) pilB 991332..993032 (-) 1701 WP_320393279.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMK51_RS04590 (QMK51_04595) - 993259..993669 (+) 411 WP_320393280.1 pilin -
  QMK51_RS04595 (QMK51_04600) - 993991..994347 (+) 357 WP_320393281.1 BON domain-containing protein -
  QMK51_RS04600 (QMK51_04605) - 994632..994928 (-) 297 WP_320393282.1 DUF2845 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44077.95 Da        Isoelectric Point: 9.8042

>NTDB_id=831537 QMK51_RS04580 WP_320393278.1 990112..991329(-) (pilC) [Pseudomonas sp. P9_31]
MAVKAAKISVYAWEGTDRKGAKMTGELTGQNPALIKAQLRKQGINPGKVRKKSASIFSAGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFSGFGAELPAFTVMVIGLSEFMQDWWWMLLGVLGAGIFGVR
YAFKNSPGFRDRMDTWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFAMRTSGIFPTMAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=831537 QMK51_RS04580 WP_320393278.1 990112..991329(-) (pilC) [Pseudomonas sp. P9_31]
ATGGCGGTCAAAGCAGCGAAAATCAGCGTGTATGCCTGGGAGGGCACGGATCGCAAAGGCGCGAAAATGACCGGCGAGTT
GACCGGGCAAAATCCCGCGCTGATCAAGGCTCAATTGCGCAAGCAGGGCATCAACCCGGGCAAGGTGCGGAAAAAGTCCG
CGTCCATTTTCAGTGCCGGCAAACGCATCAAGCCCCTGGACATTGCCCTGTTTACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTGCTGCAATCGTTCGATATCATCGGCGAAGGCTTCGATAACCCGAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCCGGCAACAGCTTCGCCGCGGCCCTGCGTAAAAAGCCCCAGTATTTCGATGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAGCAGGCCGGTGCCCTGGATACCCTGCTGGAACGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGCCGTGGTGTTCGTCGCGATCATTGTGACCGGCAT
TCTGCTGGTCAAGGTTGTACCGCAGTTCGAGTCGGTGTTCTCAGGATTTGGCGCCGAGCTGCCGGCGTTCACCGTAATGG
TCATCGGCTTGTCGGAGTTCATGCAGGACTGGTGGTGGATGTTGCTCGGCGTGCTGGGTGCAGGGATCTTCGGCGTGCGC
TACGCCTTCAAGAACTCCCCAGGCTTTCGCGACCGGATGGACACCTGGTTGCTGAAACTGCCGTTGGTTGGCGCGCTCAT
GTACAAGTCCGCCGTGGCCCGTTACGCCCGCACCCTGTCGACGACGTTCGCAGCCGGCGTGCCACTGGTCGAAGCCCTTG
AGTCAGTGGCGGGCGCGACCGGCAACATCGTGTTCAAGCGAGCGGTGTTACGCATCAAACAGGATGTTTCGACCGGCATG
CAGCTGAATTTTGCCATGCGCACCTCCGGCATCTTTCCGACCATGGCGATCCAGATGACGGCCATTGGCGAAGAGTCCGG
CGCGCTGGACGACATGCTCGACAAGGTCGCGAGTTTCTACGAGGCCGAGGTGGACAACATGGTCGATAACCTGACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTTATCGTCGGCGGGCTGGTGGTTGCAATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.572

100

0.753
  pilC Acinetobacter baylyi ADP1

61.52

100

0.62
  pilC Acinetobacter baumannii D1279779

59.559

100

0.6
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria gonorrhoeae MS11

42.289

99.259

0.42
  pilC Vibrio campbellii strain DS40M4

41.769

100

0.42
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilG Neisseria meningitidis 44/76-A

41.791

99.259

0.415
  pilC Thermus thermophilus HB27

38.404

99.012

0.38