Detailed information NTG0831536

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMK51_RS04575
• Genome accession: NZ_CP125375
• Coordinates: 989238..990110 (-)
• Length: 290 a.a.
• NCBI ID: WP_320393277.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P9_31
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 984238..995110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK51_RS04540 (QMK51_04545)	-	984811..985278 (+)	468	WP_258699023.1	FAD/FMN-containing dehydrogenase	-
QMK51_RS04545 (QMK51_04550)	-	985290..985736 (-)	447	WP_320393273.1	potassium channel family protein	-
QMK51_RS04550 (QMK51_04555)	-	985759..986859 (-)	1101	WP_320393274.1	AI-2E family transporter	-
QMK51_RS04555 (QMK51_04560)	-	987444..988133 (+)	690	WP_320393275.1	energy-coupling factor ABC transporter permease	-
QMK51_RS04560 (QMK51_04565)	-	988197..988412 (+)	216	WP_258699036.1	hypothetical protein	-
QMK51_RS04565 (QMK51_04570)	yacG	988421..988621 (-)	201	WP_223485972.1	DNA gyrase inhibitor YacG	-
QMK51_RS04570 (QMK51_04575)	coaE	988618..989241 (-)	624	WP_320393276.1	dephospho-CoA kinase	-
QMK51_RS04575 (QMK51_04580)	pilD	989238..990110 (-)	873	WP_320393277.1	A24 family peptidase	Machinery gene
QMK51_RS04580 (QMK51_04585)	pilC	990112..991329 (-)	1218	WP_320393278.1	type II secretion system F family protein	Machinery gene
QMK51_RS04585 (QMK51_04590)	pilB	991332..993032 (-)	1701	WP_320393279.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QMK51_RS04590 (QMK51_04595)	-	993259..993669 (+)	411	WP_320393280.1	pilin	-
QMK51_RS04595 (QMK51_04600)	-	993991..994347 (+)	357	WP_320393281.1	BON domain-containing protein	-
QMK51_RS04600 (QMK51_04605)	-	994632..994928 (-)	297	WP_320393282.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32121.23 Da
• Isoelectric Point: 7.3649

>NTDB_id=831536 QMK51_RS04575 WP_320393277.1 989238..990110(-) (pilD) [Pseudomonas sp. P9_31]
MSLNEFLSLDPQAFVITAGGIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPAEAPGPAYNLILPHSECPHCGHRIR
VWENIPVLSYLFLRGRCSNCAAPISKRYPLTELACGLLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLILNSFGLFVSLHDAFWGAVAGYMALWTVFWLFKLITGKDGIGYGDFKLLAMLGAWGGWQILPLTILLSSLAG
AILGMILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=831536 QMK51_RS04575 WP_320393277.1 989238..990110(-) (pilD) [Pseudomonas sp. P9_31]
ATGTCCTTGAACGAATTTCTGAGCCTCGACCCGCAGGCCTTCGTGATCACCGCAGGAGGGATCGGCCTGCTGATCGGCAG
CTTTCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCCTGCAGGCCCATGACGTACTGGATT
TGCCAGCCGAAGCCCCAGGCCCTGCTTACAATCTGATACTGCCTCACTCCGAGTGTCCCCACTGTGGTCATCGGATCCGC
GTGTGGGAAAACATCCCCGTGCTCAGTTATCTGTTTTTACGCGGGCGATGCTCGAACTGCGCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAGCTGGCCTGCGGGTTGCTGTCGGCATTCGTCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGTGTTGGTCCTGAGTTGGGGCCTGTTGGCGATGAGCCTGATCGACGCCGAACATCAGCTGTTGCCGGACGTGCTGGTG
CTGCCGTTGATGTGGCTGGGGTTGATCCTCAACAGCTTCGGGCTCTTCGTATCACTGCATGATGCGTTCTGGGGTGCGGT
GGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGCTACGGTGACT
TCAAGCTCCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCCCTGACCATCCTGCTGTCATCGCTGGCAGGG
GCCATTCTCGGGATGATTTTGCTGCGCCTGCGGGATGCGAAAACCTCGACGCCGTTACCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.65	97.586	0.514
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.549	94.138	0.476
pilD	Acinetobacter nosocomialis M2	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438