Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | H7680_RS08760 | Genome accession | NZ_AP023394 |
| Coordinates | 1787948..1788439 (-) | Length | 163 a.a. |
| NCBI ID | WP_014612571.1 | Uniprot ID | - |
| Organism | Streptococcus dysgalactiae subsp. equisimilis strain 159 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1782948..1793439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7680_RS08745 (SDSE159_17080) | - | 1785676..1786620 (+) | 945 | WP_003059456.1 | magnesium transporter CorA family protein | - |
| H7680_RS08750 (SDSE159_17090) | - | 1786752..1787411 (+) | 660 | WP_014612570.1 | DUF1129 domain-containing protein | - |
| H7680_RS08755 (SDSE159_17100) | rpsR | 1787544..1787783 (-) | 240 | WP_002983142.1 | 30S ribosomal protein S18 | - |
| H7680_RS08760 (SDSE159_17110) | ssb | 1787948..1788439 (-) | 492 | WP_014612571.1 | single-stranded DNA-binding protein | Machinery gene |
| H7680_RS08765 (SDSE159_17120) | rpsF | 1788461..1788751 (-) | 291 | WP_002983117.1 | 30S ribosomal protein S6 | - |
| H7680_RS10605 | - | 1789716..1790009 (-) | 294 | WP_014612572.1 | hypothetical protein | - |
| H7680_RS08770 (SDSE159_17130) | mutY | 1790174..1791340 (+) | 1167 | WP_014612573.1 | A/G-specific adenine glycosylase | - |
| H7680_RS08775 (SDSE159_17140) | trxA | 1791391..1791705 (-) | 315 | WP_003052691.1 | thioredoxin | - |
| H7680_RS08780 (SDSE159_17150) | - | 1791932..1793251 (+) | 1320 | WP_014612574.1 | FAD-containing oxidoreductase | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17951.73 Da Isoelectric Point: 4.8894
>NTDB_id=83079 H7680_RS08760 WP_014612571.1 1787948..1788439(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNGYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNGYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=83079 H7680_RS08760 WP_014612571.1 1787948..1788439(-) (ssb) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACGGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACGGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.558 |
100 |
0.607 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
65.031 |
0.374 |
| ssb | Glaesserella parasuis strain SC1401 |
32.961 |
100 |
0.362 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.128 |
66.871 |
0.362 |